Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi103g00008 ATGCGAACGCTTTGTGATGCATGTGAGAGCGCCGCCGCTATCGTTTTTTGCGCCGCCGATGAGGCTGCGCTCTGCCGTGCCTGCGACGAGAAGGTTCATATGTGTAATAAGCTAGCTAACCGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCTCGCTGTGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATGGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCTGGAGATAAACCTGGTCATGCAGAAAACCCAGCTGAGACTAAAAGAGGACAAAATCCACTGCCCAAAATGAAAATGGGAGAAAAACAAGAAAATCACAGGATGCCTCTGGTTCTGATGCCAGAACCTGAGACTGATGGGCATGCCACCAGGGAAACTAAATTGATTGATTTGAACATGAGGCCTCAGAGAATACATGAACAAACACCAAACAATCAGGACCTTACACCAGAAATCTTAAGAGGGAATGGCTTCATATATGTTCCAACTTACAAGGTTCCATACAGTGTTGACATCCTATTCTGGCAAATGGGGGTGTTGGAGCACCAAGTCATTTAA 648 0.4522 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLANRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKPGHAENPAETKRGQNPLPKMKMGEKQENHRMPLVLMPEPETDGHATRETKLIDLNMRPQRIHEQTPNNQDLTPEILRGNGFIYVPTYKVPYSVDILFWQMGVLEHQVI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi103g00008 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi103g00008 215 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Sebi103g00008 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 139 - -
Sebi103g00008 215 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sebi103g00008 215 SMART bboxneu5 51 96 IPR000315 GO:0008270
Sebi103g00008 215 MobiDBLite consensus disorder prediction 105 125 - -
Sebi103g00008 215 CDD Bbox1_BBX-like 56 96 - -
Sebi103g00008 215 Gene3D Classic Zinc Finger 2 91 - -
Sebi103g00008 215 FunFam B-box zinc finger protein 19 2 92 - -
Sebi103g00008 215 CDD Bbox1_BBX-like 4 47 - -
Sebi103g00008 215 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Sebi103g00008 215 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Sebi103g00008 215 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi103g00008 Sebi-Chr103 319161 321303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi103g00008 1 186 C2C2-CO-like Transcription Factor Family AT2G21320 58.333 1.45e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sebi103g00008 zf-B_box 2.1e-07 No_clan