Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1039g00009 ATGGAGCTCTATGACCATGATTTCTTGGAGGAATTAATGGCTCTAAGAAGAGAAACATGGGACACCAATCCAATTACAGAAGAAAACCAATTCTTCTCTAATGGTTGGAGTTTTGACTCTTTTGATCAAAACTCTCTAGGCTATATCCCAAACTCTTCTTGTGGTCAACAAGTTCCTCAAAGTTATTACAATGACTGCAACAACTTCAATGAAATCTATGGCTCCTTGCTTCTTGATGACTCCTCTGCCTCTACCTCAGCACCACAGATTATGGATTCATACTATAATAATAGTAACTCCCTTGACCTTGATACTCCACTTAATACACCTCCATTTCTTGCTCAAGAAGACTTGCCATTGTCCATGATGGAAGAAGAGGATCCATGTTTGCTTGGGGAAGAGCTTCAGAATTTGGAGCTGCAAACCACTTGCAAAATGGAGCCAATCCAATCCCCTGAAACAATGCCAGTTTTCAACATGGGCACTGGTCTTGAAAGAAAGAATCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCAGAGAGAAGAAGAAGAAAGAGATTAAATGACCGTCTCTCAATGCTAAGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAGCTTCTAGAGAAGATCAACAATCTTCAACAGGAAATAGAAGTGGATTCAGATTCAAACATTGCTGGCATTTTCAAAGATGTAAAGCCAAATGAAATCTTAGTGAGAAATTCACCAAAGTTTGAGGTGGAGAGGAATGTGGACACCAGGATTGAAATTTGCTGTGCAGGGAAGCCAGGGTTGTTGGTATCCACAGTGAACACCTTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTAATTAGCTCTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTAGAGAGAAGGACAATGCTGAGTTCTGAAGATATTAAGCAAGCATTATTTAGAAGTGCAGGGTATGGAGGGAGATGTTTATGA 1038 0.4027 MELYDHDFLEELMALRRETWDTNPITEENQFFSNGWSFDSFDQNSLGYIPNSSCGQQVPQSYYNDCNNFNEIYGSLLLDDSSASTSAPQIMDSYYNNSNSLDLDTPLNTPPFLAQEDLPLSMMEEEDPCLLGEELQNLELQTTCKMEPIQSPETMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEIEVDSDSNIAGIFKDVKPNEILVRNSPKFEVERNVDTRIEICCAGKPGLLVSTVNTLEALGLEIQQCVISSFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1039g00009 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Sebi1039g00009 345 Pfam Helix-loop-helix DNA-binding domain 181 224 IPR011598 GO:0046983
Sebi1039g00009 345 CDD ACT_UUR-ACR-like 271 312 - -
Sebi1039g00009 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 237 IPR036638 GO:0046983
Sebi1039g00009 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 340 - -
Sebi1039g00009 345 SMART finulus 181 230 IPR011598 GO:0046983
Sebi1039g00009 345 Coils Coil 214 241 - -
Sebi1039g00009 345 Gene3D - 165 240 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1039g00009 Sebi-Chr1039 139954 141436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1039g00009 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.132 4.40e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi1039g00009 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1039g00009 - - gmx:100812578 541.962