Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1038g00005 ATGGATCCAATTACATCACATGGTCATTCTCTTCCACCTCCTTTCCACACAACAAGAGATCTCCATCTACACCACCAGCAGCCACCACATCAATTCCACACCACTTTACACCAAACCACAGAAGACGACGAGCATAGCGGAAGCACCGGAGGCCTTCACAAAAGGGAACGACAAGAAACCACCAACAACGCAACAGGCTCAGGCGGTGAAGGTGAGATAACAAGAAGACCAAGAGGAAGACCAGCGGGCTCCAAGAACAAGCCCAAACCACCCATCATCATCACACGTGACAGCCCAAACTCCCTAAGAACCCACATGATGGAGGTAGCAGACGGTTGTGACATAATCGAAAGCGTTTCCAACTTCGCTAGAAGGCGTCAGAGAGGGGTTTGCATCATGAGCGGAACTGGAACCGTCACCAACGTCACTCTCAGGCAACCAGCCTCTGCCGGTGCTGTTGTTACTCTCCAAGGAAGGTTCGAGATCTTGTCCCTTTCCGGTTCGTTTCTTCCACCACCGGCTCCACCGCCGGCTTCGGGTTTGACGATATACTTGGCCGGTGGCCAAGGACAGGTGGTAGGAGGAAGTGTGGTTGGGACGCTGGTTGCTTCAGGGCCTGTGATGATTATGGCTGCTTCGTTTAGTAACGCTGCTTATGAGAGGCTTCCTTTGGAAGAAGAAGAAGGTTCGATGGCATTGCAAGGAGGTTCAATTGGATCGCCAGGTGGAAGTGGAGTTGGTGGTCAACCGTCACAGGTTTTAGGAGATGCAACAACTACAACTGCTCCACTCTTTCATGGCTTGCCTCAGAATCTTCTCAATTCTATTCAGATGCCTTCTGAGGCTTTTTGGGCTAATGCTCCTCGCCCTCCTCCATATTGA 882 0.5136 MDPITSHGHSLPPPFHTTRDLHLHHQQPPHQFHTTLHQTTEDDEHSGSTGGLHKRERQETTNNATGSGGEGEITRRPRGRPAGSKNKPKPPIIITRDSPNSLRTHMMEVADGCDIIESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASAGAVVTLQGRFEILSLSGSFLPPPAPPPASGLTIYLAGGQGQVVGGSVVGTLVASGPVMIMAASFSNAAYERLPLEEEEGSMALQGGSIGSPGGSGVGGQPSQVLGDATTTTAPLFHGLPQNLLNSIQMPSEAFWANAPRPPPY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1038g00005 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 286 IPR014476 GO:0003680
Sebi1038g00005 293 CDD DUF296 103 170 IPR005175 -
Sebi1038g00005 293 MobiDBLite consensus disorder prediction 36 60 - -
Sebi1038g00005 293 MobiDBLite consensus disorder prediction 1 97 - -
Sebi1038g00005 293 MobiDBLite consensus disorder prediction 230 249 - -
Sebi1038g00005 293 FunFam AT-hook motif nuclear-localized protein 102 229 - -
Sebi1038g00005 293 PIRSF ESCAROLA 15 291 IPR014476 GO:0003680
Sebi1038g00005 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 216 IPR005175 -
Sebi1038g00005 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 228 - -
Sebi1038g00005 293 Gene3D - 102 234 - -
Sebi1038g00005 293 ProSiteProfiles PPC domain profile profile. 99 236 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1038g00005 Sebi-Chr1038 105583 106464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1038g00005 1 290 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 53.086 2.01e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1038g00005 - - gmx:100807581 364.77