Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1034g00002 ATGTTTAGTATGGCTTCCCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTATTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGAAGTGTACAAATCAATTGCTGATTTGAAAGAAGTAACACAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCGGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAAATTGATTTCTTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1578 0.3606 MFSMASRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFIQLSDHASLTLEEEFLEREVYKSIADLKEVTQLDGSMFYCKKCVTHYSTFVTRYSIRLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDFFKDKKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKDNLSVSCDNGVDTPSPLLPTGKTASNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEEKN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1034g00002 525 Pfam Domain of unknown function DUF223 48 139 IPR003871 -
Sebi1034g00002 525 Gene3D - 11 118 IPR012340 -
Sebi1034g00002 525 Pfam Replication factor-A C terminal domain 288 382 IPR013955 -
Sebi1034g00002 525 PANTHER OS03G0429900 PROTEIN 22 396 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi1034g00002 525 SUPERFAMILY Nucleic acid-binding proteins 19 118 IPR012340 -
Sebi1034g00002 525 CDD RPA1_DBD_B_like 145 250 - -
Sebi1034g00002 525 Gene3D - 119 261 IPR012340 -
Sebi1034g00002 525 SUPERFAMILY Nucleic acid-binding proteins 288 387 IPR012340 -
Sebi1034g00002 525 CDD RPA1_DBD_A_like 24 112 - -
Sebi1034g00002 525 SUPERFAMILY Nucleic acid-binding proteins 125 251 IPR012340 -
Sebi1034g00002 525 Gene3D - 280 407 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1034g00002 Sebi-Chr1034 15555 18146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1034g00002 23 241 Core DNA Replication Machinery Family AT2G06510 28.509 8.89e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1034g00002 - - adu:107477146 409.068