Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi102g00054 ATGACTTCAAAACCTATCAATGGAGATGGCTTCAACGGTCACACTACATCAAAGCCAATCCACTTTTTCCGCATCATGCACCATGAAACCCTTTCGCAGGGAAAGCTAAGGATTCCAGAAAAGTTTGTGAGGAAATATGGAGAAAGCTTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAAAGTAGATGTGGAGAAACATGATGATGGCAGAGTTTGGTTTCAAAACGGTTGGAAAGAGTTTGAGGAGTATTACTCACTAGCCCATGGCCATCTATTGGTTTTCAAATTTGATGGAATTACATCCCATTTTCATGTACACATCTATGATATGAGTACCATGGAAATAGACTACCCTCTCAAAAAAGATGAGGGTATTTTGAAGAATCCAACTGAAGAGAAGAGAAGCATTCAACAGAATACTAAAAGGCCATCCGTTTGTAACTATGGACCTCATGAAGTTGCTAGCAATACTTCCTTCACAATGACAATAAGAAAAACTGCCAAAGGGATCACTGCAGGGCTACATCAAACCGGGTCCACAAAAAGTAACGCTGCTGGTTGGGGACAAATCATGGACGGTGAAGTTGATTCATTACCCAAACATTCCAAGCAGTTCATTTTCTGCAGGATGGCCAATGTTCGCAAGGGAAAACAATTTAAAAGTACAAGATACTTGCTTCTTCGAGCTGCTAAATTATAG 714 0.4034 MTSKPINGDGFNGHTTSKPIHFFRIMHHETLSQGKLRIPEKFVRKYGESLSNTMFLKLPNGAEWKVDVEKHDDGRVWFQNGWKEFEEYYSLAHGHLLVFKFDGITSHFHVHIYDMSTMEIDYPLKKDEGILKNPTEEKRSIQQNTKRPSVCNYGPHEVASNTSFTMTIRKTAKGITAGLHQTGSTKSNAAGWGQIMDGEVDSLPKHSKQFIFCRMANVRKGKQFKSTRYLLLRAAKL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi102g00054 237 Pfam B3 DNA binding domain 23 114 IPR003340 GO:0003677
Sebi102g00054 237 ProSiteProfiles B3 DNA-binding domain profile. 21 116 IPR003340 GO:0003677
Sebi102g00054 237 Gene3D - 14 117 IPR015300 -
Sebi102g00054 237 PANTHER B3 DOMAIN-CONTAINING 14 151 - -
Sebi102g00054 237 CDD B3_DNA 21 114 IPR003340 GO:0003677
Sebi102g00054 237 SUPERFAMILY DNA-binding pseudobarrel domain 16 116 IPR015300 -
Sebi102g00054 237 SMART B3_2 22 116 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi102g00054 Sebi-Chr102 1666413 1667551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi102g00054 22 122 B3 DNA Binding Superfamily AT3G18990 39.604 1.69e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi102g00054 B3 3.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi102g00054 - - aprc:113849508 192.2