Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi102g00046 ATGGAAGCTCTCCATCACGGAATCGTCACCGTTCATTTCTACGATCTCAGGCATGCACAGAACGCCTTCACCGCCATTCGAAACCAACACATGCACTGCGCTTCCTTCTTCAACTCCCCTCCTCAATTCTACTCCGCTCCACCGCCGCCACCAGTTGGCCTCGTCGCCGGTCGTCCCGTCTGGGCCCACTACGTCATCCCTGCCTCCAATACTCTCCTTAACGGTCACAACCAAGGCACCGTCGTCGTTTTCAACTTGGACATTGACGTCTCCACTGAGAATCTTCGACAAATTTTTGAACCTTTTGGTCCCATAAAGGAAGTGAGAGATACGCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTTGACATAAGAGACGCAGCCAAGGCTTTGAAACAGATGAATGGCAGAGAAATTCATGGAAAACCCGTTATTATTGAGTTCAGTAGACCAGGGGGTCACTCCAGAAAGTTCTTCCATTCCAAAAACCCTCCTCTTCTGTCACCACCAAATTTCTCTCCTCCGCGACGTCGTTTTGCTCAACCACATTTCTCTCACAAGAAATCGACGGTTAAGATTCCAAATCCTGCGTCTATTGCCGCGTCAATGGCTTCAATGAGTTTGGGCGGGGAAGGTGGGGTTGAAGAGCAGCATTCACATGGTCCTCCAAGAAGGAATGTTGTTAGAAAGCACAATAGCGAGACCACAGTGGAAAACACAAAGCAGCAACAACCACAACTACCTAGAAGTAGATATTGGAAGGGAAAGCATGTGAAGAAACACGAAACTCGGTTTCTAATCAAAGAAGATGCCATTGTTGAGTCCAGTTCAAAAGATTCTAGAACTACTGTGATGATCAAGAACATACCCAACAAATACAGCCAGAAGCTACTGTTGAACATGTTGGATAACCACTGCATACACTGTAACGAGCAGATTGGTGACAGCGACGACCAGACTATATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATACGGGTTTGTGAATATGACATCTCCTGAGGCCACTCTCAGACTCTACAAGGCCTTCCATCTTCAACACTGGGAGGTTTTCAATTCAAGAAAAATTTGCGAAGTCACCTACGCTAGAGTTCAGGGTTTGGAAGCGTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACATGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAGGGAACTGACGGAGCCACTACCAATAGTGGGGAACAAGGAGCAGCAAATGGGCATTGAGGTACCCAGTTGTGGTGATGAGATGGAGAGTGGAGATAGGGTAGGTGATTCTGAGTATGATAACGTGTCTAGTAGCAAAAGCGGCGGCGTGGGTGATGATGACACAAGAAGTAATGAAGAAGTGGGTGAAGGCCTGCTCCAGCTGAGCACTTCTGATGATGATACGAAAGTTTGA 1476 0.4722 MEALHHGIVTVHFYDLRHAQNAFTAIRNQHMHCASFFNSPPQFYSAPPPPPVGLVAGRPVWAHYVIPASNTLLNGHNQGTVVVFNLDIDVSTENLRQIFEPFGPIKEVRDTPWKKNQRFVEFFDIRDAAKALKQMNGREIHGKPVIIEFSRPGGHSRKFFHSKNPPLLSPPNFSPPRRRFAQPHFSHKKSTVKIPNPASIAASMASMSLGGEGGVEEQHSHGPPRRNVVRKHNSETTVENTKQQQPQLPRSRYWKGKHVKKHETRFLIKEDAIVESSSKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDSDDQTISSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYMPVVFSPPRDGRELTEPLPIVGNKEQQMGIEVPSCGDEMESGDRVGDSEYDNVSSSKSGGVGDDDTRSNEEVGEGLLQLSTSDDDTKV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi102g00046 491 MobiDBLite consensus disorder prediction 429 491 - -
Sebi102g00046 491 MobiDBLite consensus disorder prediction 218 237 - -
Sebi102g00046 491 Gene3D - 225 389 IPR012677 -
Sebi102g00046 491 MobiDBLite consensus disorder prediction 451 465 - -
Sebi102g00046 491 FunFam Protein MEI2-like 1 78 167 - -
Sebi102g00046 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 152 IPR000504 GO:0003723
Sebi102g00046 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Sebi102g00046 491 Gene3D - 74 159 IPR012677 -
Sebi102g00046 491 CDD RRM3_EAR1_like 282 383 IPR034458 -
Sebi102g00046 491 FunFam Terminal EAR1-like 1 229 388 - -
Sebi102g00046 491 SUPERFAMILY RNA-binding domain, RBD 80 361 IPR035979 GO:0003676
Sebi102g00046 491 PANTHER RNA RECOGNITION MOTIF-CONTAINING 249 409 - -
Sebi102g00046 491 SMART rrm1_1 80 148 IPR000504 GO:0003723
Sebi102g00046 491 MobiDBLite consensus disorder prediction 476 491 - -
Sebi102g00046 491 MobiDBLite consensus disorder prediction 210 250 - -
Sebi102g00046 491 Pfam RNA recognition motif 2 282 392 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi102g00046 Sebi-Chr102 1359565 1361470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi102g00046 81 151 Eukaryotic Initiation Factors Gene Family AT2G23350 36.000 8.94e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi102g00046 - - vum:124847631 615.535