Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi102g00027 ATGGATGATGCAATGACAGAAAAATATCTTATGGAAGAAACAAAGGATTCAAATGCTTTAGCTCCAACTGAGGTAGATTCTAAAAAAGCATGTGAACATGATACAAGATTGGATGAACAAATTGGAATCTATTGCCTTAAATGTGGTGATGTGATTACAGAGATAAGAGATGTCATGGGACCCTTTATACAACCACGCCGAGGAAGGCGCTACCAAGAGGTGGAGAAATGCAATGGAGATTCCAAGCCTGAGCTCGAGCCAAAGGATAAGGATATGGAAGATAATGATTCTCATGCAATTACAATTAATACTTCTCATTATGAGTCTTTATCTACAGAAAATGACAGTGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGTAGGGTCAATACAACCATCACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCTTGATCGTAAAAACAAGAGAGATTTTGATGAAACACCATTGTCTATTCCTGGAGTTCCAAATCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACATAAGACGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTATTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCATGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAACACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAATAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTTGTTTTATAGATGTTTATGAGAGTGGGAATTCTGATAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTTTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGATTTTAGTACAGTTGTTTGAGGAGTGTTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCCGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTAGTGAAGGTATCAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCCGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAA 1944 0.3843 MDDAMTEKYLMEETKDSNALAPTEVDSKKACEHDTRLDEQIGIYCLKCGDVITEIRDVMGPFIQPRRGRRYQEVEKCNGDSKPELEPKDKDMEDNDSHAITINTSHYESLSTENDSVWSLIPELSKKMHDHQKKGFQFIWQNIVGSIQPSLMEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLILDRKNKRDFDETPLSIPGVPNPTSDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKTYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVHEVLKELDIKQKKGNDKNPEKTQHLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSCFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKFDFRVGSKVRFILNLIFRVVKEEKVLIFCRNLAPMKILVQLFEECFKWKKDGEILLLYGEQDPFERGKVIDKFEDPCGVSKVLLASITACSEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKDGLCVSTLGKRLNGGR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi102g00027 647 MobiDBLite consensus disorder prediction 70 94 - -
Sebi102g00027 647 SMART helicmild6 539 628 IPR001650 -
Sebi102g00027 647 SMART ultradead3 124 364 IPR014001 -
Sebi102g00027 647 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 631 IPR044567 GO:0080188
Sebi102g00027 647 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 647 IPR001650 -
Sebi102g00027 647 CDD SF2_C_SNF 503 632 - -
Sebi102g00027 647 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 352 IPR014001 -
Sebi102g00027 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 354 IPR027417 -
Sebi102g00027 647 Gene3D - 96 393 IPR038718 -
Sebi102g00027 647 Pfam Helicase conserved C-terminal domain 511 627 IPR001650 -
Sebi102g00027 647 Pfam SNF2-related domain 141 456 IPR000330 GO:0005524|GO:0140658
Sebi102g00027 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 640 IPR027417 -
Sebi102g00027 647 Gene3D - 431 640 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi102g00027 Sebi-Chr102 999229 1001452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi102g00027 557 632 RAD5 or RAD16-like Gene Family AT5G05130 42.857 5.18e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi102g00027 SNF2_N 3.5e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi102g00027 K10875 - qsa:O6P43_013801 824.698