Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi102g00024 ATGCTACTCTTGCTATTTCTTGTACCTTCCTTCATTTGCTCTTCCCCACTTCAAGATCCTGAATTAGTAGTTGAAGAAGTACAAAAGAGCATTAATGCCTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGTACTGGCAACCCTATTGATGATTGTTGGAGGGATGGTAAAATATATGTGGTAACTGACCCTGGTGATCACCCTGTGAACCCAAAGCCAGGAACTTTAAGATATGGTGTTATCCAAGAAGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATTAAGCTCAAGCAAGAGCTTATGATGAATTCTTTCAAAACTATTGATGGTAGAGGTGCAAATGTGCACATTGCTGGTGGACCTTGTATTACTATACAATTTGTGACTAACATTATCATTCATGGGATTAATATTCATGATTGCAAAAGGGGAGGGAATGCCTATGTGAGGGATTCCCCTACTCATTATGGTTTTAGGACTCTTTCAGACGCTATCACCATCTCCAACAATTATTTGACACACCATAACAAGGTCATGCTTTTGGGACATAGTGATTCTTTTACTAGAGACAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGAGAAGGACTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTTCATGTGGTGAACAATGACTACATCAATGGCAAATGTCACAAAGAGGGAGAATGCACCACAGAGCCAATGGAAGAAGTGGAATTGGAGGTCTTCAGGAGATTTGATGTTAAATGGTGCCTTTTTACAGCATCAGGTGCAGGTGCATCTTCAAGCTATGCCAGAGCATCAAGTTTGGCAGCAAAATCATCTTCTTTGGTCAGTTCTATCACAGCATCAGCTGGATCACTGAACTGCAGAAAGGGATCACGCTGCTGA 915 0.4109 MLLLLFLVPSFICSSPLQDPELVVEEVQKSINASRRNLAFLSCGTGNPIDDCWRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITIQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGFRTLSDAITISNNYLTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYINGKCHKEGECTTEPMEEVELEVFRRFDVKWCLFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLNCRKGSRC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi102g00024 304 Gene3D - 160 297 IPR012334 -
Sebi102g00024 304 Gene3D - 46 159 IPR012334 -
Sebi102g00024 304 PRINTS Pollen allergen Amb family signature 101 117 IPR018082 -
Sebi102g00024 304 PRINTS Pollen allergen Amb family signature 275 298 IPR018082 -
Sebi102g00024 304 PRINTS Pollen allergen Amb family signature 65 90 IPR018082 -
Sebi102g00024 304 Pfam Pectate lyase 162 229 IPR002022 -
Sebi102g00024 304 SUPERFAMILY Pectin lyase-like 54 304 IPR011050 -
Sebi102g00024 304 SMART amb_all 93 245 IPR002022 -
Sebi102g00024 304 PANTHER PECTATE LYASE 18-RELATED 54 165 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi102g00024 Sebi-Chr102 808481 810330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi102g00024 19 304 Polysaccharide Lyase AT4G13710 51.958 5.22e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi102g00024 K01728 - gmx:100816256 452.981