Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1026g00008 ATGGAGAGTGCACGTAGATCGTTTGAAAGATCTAGAGAACCGGGCTCCAAGAAGCCCCGGTTGATCGACGAGCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACCAACGACAGAGACTCTGAAAGCAGCGATTCTGGTCGGGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTACAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAATTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTGCTAACATTCTAGAGGTTTCTGATGATCTAATAAGTGGTCATGAAGAAATAAACACTCCACAGTTTAAAATTTCAATTAGTGCTGAAGTCCACTTATGGTTCCAACTGAACAAAAAGCTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGACTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGTAAGGCATACAGACTGGTTGATCCTTCTGTCCATTCAAGTATGAGGCATCTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGTCATCAGTCATGTGTTCCTTGGATGATGAAACAGGACCGGAAAATATATAA 771 0.4578 MESARRSFERSREPGSKKPRLIDELDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCANILEVSDDLISGHEEINTPQFKISISAEVHLWFQLNKKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRLVDPSVHSSMRHLLELGEEYFLLRPFRSDSQSQRPPHSIHVNPKYLERQRLQQSSRSSVMCSLDDETGPENI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1026g00008 256 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 212 241 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sebi1026g00008 256 CDD CID_Pcf11 70 205 IPR047415 -
Sebi1026g00008 256 SUPERFAMILY ENTH/VHS domain 145 205 IPR008942 -
Sebi1026g00008 256 MobiDBLite consensus disorder prediction 236 256 - -
Sebi1026g00008 256 MobiDBLite consensus disorder prediction 1 27 - -
Sebi1026g00008 256 SUPERFAMILY ENTH/VHS domain 65 117 IPR008942 -
Sebi1026g00008 256 Gene3D - 65 214 IPR008942 -
Sebi1026g00008 256 Pfam CID domain 74 200 IPR006569 -
Sebi1026g00008 256 ProSiteProfiles CID domain profile. 65 241 IPR006569 -
Sebi1026g00008 256 MobiDBLite consensus disorder prediction 1 66 - -
Sebi1026g00008 256 SMART 558neu5 68 215 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1026g00008 Sebi-Chr1026 133336 135223 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1026g00008 58 232 C2H2 Transcription Factor Family AT4G04885 43.750 2.01e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1026g00008 K14400 - gmx:100788958 275.404