Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1026g00007 ATGCATCCACATGTAATCAGGGAATTATTGGATGAACTCCCTCATCATTGCAGAATTTGTGGTGTTAGGCTTAAACAGCAAGAACAATTCAATAGACACTCGGACTGGCATGCGGCAAGAGAAAGAGAACAAAATAGTCTAATTAGGGTGTCAAGAAGATGGTATGCAGAGTCAAATGATTGGATTGCTGGCAAAGCTGAATATCCATCAGAGCGTGAGACTTCTGATTCTGTAGATGTATATGACAAAACATCGGACACGAGTCAATCGGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGGGAGCTATTTGAAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAGCAATAGTGAGGTGGAAAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATTATCCAGTGTCACCAAAATGGATCATGATTAA 489 0.4151 MHPHVIRELLDELPHHCRICGVRLKQQEQFNRHSDWHAAREREQNSLIRVSRRWYAESNDWIAGKAEYPSERETSDSVDVYDKTSDTSQSDTMVVADENQCLCVLCGELFEDVYCQETDQWMFKGAVYMNNSDSNSEVESRNVGPIIHARCLLSSVTKMDHD 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1026g00007 162 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 2 152 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sebi1026g00007 162 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1026g00007 Sebi-Chr1026 126689 127348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1026g00007 5 151 C2H2 Transcription Factor Family AT4G04885 38.562 2.73e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1026g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1026g00007 K14400 - gmx:100788958 233.032