Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1026g00006 ATGGATAGTGCACGTAGATCTTTAGATAGATCGAGAGAAACAGGCTCCAAGAAGCCAAGATTGATTGACGAGCTGGACAGAGGGTTGAATATACCAGGCTCCAAGAAGCCCCGATTGATCGACGAGCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACCAATGACAGAGACTCTGAAAGCAGCGATTCTGGTCGGGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAACTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCGATTGCTGGGACAGTTTGTACTAACATTCTAGAGGTTTCTGATGTTCTAATAAGTGGTGTTATTTCTTGTTATGCGATGACTGAGCCATTTATAAATTGTACTGGTGTTGTGCCAACTGAACAAAAGCTGCCATCACTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCAATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTTCTACACTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGTGTAGTTAATGATACCGCTGGAGCTATTTTAAACTCAAACGAGGACTCAGAAAGGCCAGATAGAGCTTTGGGCGCTGCACGGCCGTGGCTGGATCCTAGGGTTAGCATGCATAATAATCAGCACACTCATAGAGATGCATTAAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAATTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGATCATTGGTGGTGTTGCTGAGACCATATCTGGGCAAACAAATGGTTTCAGTCTCAAACATAGTTTTTCTAATCATGAAGCACCAAAGTCCATGAATTCAGATGCACATCGTCAGCCAACACAAATAGTAACTAACATAAGGAGCAGTGGGATGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTTTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATATGGAAGGTGAAGATCACCTCCAAATCACACACCCTTTTGGGGCAAAGGTTGGTAGAGAAACATCCACTGTGAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAGCACTCAAGTGATAAGTTGAATCTGAAGCCGGGTCACTCAGAAGGATTTGGTTCCGCACTTAGTGGCTTACCCGGTAATACATATTCTTCAGATATCAGGATGAGGAATCGGTCTTTTATGCCAAATGCAACAATAGGAATGGCCAAAATTATGGGACAGCAGCAATTTGATTCTGGTGGAGCTGAATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCATCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGAAAGATTGTCGCTTGACACCTAAAACATCTCAATTTTTGGGAGGTCTGCAAAACCAATATATTAGAGATCCCTCACCTGCCCTTCTTCCCAATGTTCAGCCAAGGCTTCAGCAACAGCAGCCTGGCCCTTCTCAGACTGATGCTACTGTTAAAACTAAGAAGCCACCACCCCAGTCTAAAGTTTCTTTGGCCAGAGAAACTTCAGAAAAGTCAACCACAAATAGTCTTTCAACTGCATCTGTGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTAGTCTTCCTACTTCAAGAATTCTGGATGCAAGGAATCTCCCATCTCAGTCAGGGGTTCGGCCTACTAGGTCAGATGGCCATTCCCCTACCACATTAATTTCTTTAGGGTCTACAGCATCACCATCTTCATCAGGTCCTCTGAATGATTATTCATCTACTCTGCCAAAAGTACTTAAAGGAAAGGTGGGACAATCACAAAGGGATTCTACTCATCCCCTGCATCCTCTAAAGTGA 2295 0.4449 MDSARRSLDRSRETGSKKPRLIDELDRGLNIPGSKKPRLIDELDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVSDVLISGVISCYAMTEPFINCTGVVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVNSSMRHLFGTWRGVFPPQTLQVIEKELGFTPAVNGSASASSTLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDTAGAILNSNEDSERPDRALGAARPWLDPRVSMHNNQHTHRDALNDSVPEKRIGGSYGGNEYSSGISSNLGSGVGRTGSRIIGGVAETISGQTNGFSLKHSFSNHEAPKSMNSDAHRQPTQIVTNIRSSGMSNNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMADDENMEGEDHLQITHPFGAKVGRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLNLKPGHSEGFGSALSGLPGNTYSSDIRMRNRSFMPNATIGMAKIMGQQQFDSGGAESPSGQSPLRQQSPSLSVSIHHPHSVQNLAEKDCRLTPKTSQFLGGLQNQYIRDPSPALLPNVQPRLQQQQPGPSQTDATVKTKKPPPQSKVSLARETSEKSTTNSLSTASVKSGVISKKSITSSLPTSRILDARNLPSQSGVRPTRSDGHSPTTLISLGSTASPSSSGPLNDYSSTLPKVLKGKVGQSQRDSTHPLHPLK 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 558 583 - -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 629 764 - -
Sebi1026g00006 764 SMART 558neu5 86 233 IPR006569 -
Sebi1026g00006 764 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 79 739 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 493 528 - -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 1 83 - -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 629 738 - -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 269 293 - -
Sebi1026g00006 764 SUPERFAMILY ENTH/VHS domain 83 233 IPR008942 -
Sebi1026g00006 764 Pfam CID domain 92 226 IPR006569 -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 1 45 - -
Sebi1026g00006 764 CDD CID_Pcf11 88 225 IPR047415 -
Sebi1026g00006 764 Gene3D - 80 233 IPR008942 -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 239 302 - -
Sebi1026g00006 764 MobiDBLite consensus disorder prediction 239 260 - -
Sebi1026g00006 764 ProSiteProfiles CID domain profile. 83 236 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1026g00006 Sebi-Chr1026 121196 126343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1026g00006 76 436 C2H2 Transcription Factor Family AT4G04885 36.364 1.35e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1026g00006 K14400 - gmx:100788958 886.715