Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1026g00005 ATGTTTGCAAGGGAACCCAGTTCCACCATTCCCAATTCTATCTTTTCTATCCAAGACTTTCGATCTGGTGGACGATCCGTCTCTGGATTCCATTATATCATGGGGCTCAACCGTGTGAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAAAACACGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCAAGTTTTGTTCGCCAGTTAAATACTTATGTGGGTATTGCTGTAACACAACCTGGATTCCGCAAGATTGATACTGATACATGGGAGTTTTATAATGAAGCTTTCCAGCAAGGAAAGAGACATCTTCTGAAGAACATTCAAAGGCGCAGGTCATCTCAATCCCTGCAGGTTGGTTGCTATATTAGGCCTTCTACTGATGCAGGGAAGTCAGGACTTGAGGTTGAGATAGAAAGACTGAGGAAAGAAAGGAGTATGTTGATGCAAGAGGTGGTTGAATTGCAGCAACAGCAGAGAACAACAGTTCAACGTGCAAGACAAGTGAATCTTAGGCTCCAATCTGCAGAGCAGATACAGAAACAAATGGTTTCTTTCTTGGCAAAATTATTTGAAAATCCAACCTTTTTAACTTGCCTCAAGCATGAGAAGGAACAAAGAGATATGAATTCTCCTAGTCCTAGAGTGAGAAGGAAGTTTGTGAATCAGCACCAATGCCAAACAGGAATATCAGATTCTTTGAAGGAAGGGCAGATTGTGAAATACCATTACCAACCTGATTGGAGGAACATAACCATCTCTTCTGAAATACCAGAATTAAATTCAGTTTCAATTGAACAGTCTCCTCACCATTACCTTTCACAGGGTTTGGCAAGAGAATTGAGTGAAGGTGCAGAGAAACCAACTCTGCAGTTTGAAAATGTTGTATTATCAGATGATGAATTGGCTGTAATGCATGAGGTTATGCCAACTGCTGACATAATGGGAGAAGGGTTATCAAGCTTTAGACTTGAAGATCCCCTTTTCAAAGGGAAAAATGTAATGAGTGCTAATGAAGAAGTTCTTGCAGGTAATTTTGTTTCTTGCCTAGAGGATTTGACCAAGGAGACAGGATTTCAAGAGTTTTCACCTCTTGGAATTGAAAGCATCATCAAGCAAGAAGACATATGGAATGCCAACTTCAATGTTAGTGGTGCTCCTTCAAGCTCTGTGAATGAGCCGTGGGGAAATCCTATCAACTAA 1206 0.4096 MFAREPSSTIPNSIFSIQDFRSGGRSVSGFHYIMGLNRVSFVVWDPTLFAKHVLPRNFKHNNFSSFVRQLNTYVGIAVTQPGFRKIDTDTWEFYNEAFQQGKRHLLKNIQRRRSSQSLQVGCYIRPSTDAGKSGLEVEIERLRKERSMLMQEVVELQQQQRTTVQRARQVNLRLQSAEQIQKQMVSFLAKLFENPTFLTCLKHEKEQRDMNSPSPRVRRKFVNQHQCQTGISDSLKEGQIVKYHYQPDWRNITISSEIPELNSVSIEQSPHHYLSQGLARELSEGAEKPTLQFENVVLSDDELAVMHEVMPTADIMGEGLSSFRLEDPLFKGKNVMSANEEVLAGNFVSCLEDLTKETGFQEFSPLGIESIIKQEDIWNANFNVSGAPSSSVNEPWGNPIN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1026g00005 401 Gene3D - 34 113 IPR036388 -
Sebi1026g00005 401 FunFam Heat stress transcription factor B-4 32 113 - -
Sebi1026g00005 401 Coils Coil 132 159 - -
Sebi1026g00005 401 SUPERFAMILY "Winged helix" DNA-binding domain 40 112 IPR036390 -
Sebi1026g00005 401 SMART hsfneu3 16 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi1026g00005 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 39 224 IPR027725 -
Sebi1026g00005 401 Pfam HSF-type DNA-binding 38 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1026g00005 Sebi-Chr1026 114408 116232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1026g00005 35 257 HSF AT5G03720 52.679 7.06e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi1026g00005 HSF_DNA-bind 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1026g00005 K09419 - gmx:100788429 424.861