Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1023g00006 ATGGCTGGAATGTATGATTTGGTGAAGGACGTGTTCCCAGGCAAGCAAACATGGAGGTTGAAGGTTAGGATCGTTAGGATTTGGGAGATGTGCCCAATTGATCATCCTGCCAATCCATTTGCTATTGAGATGGTCATGATGGATGCTGAGGGAGCCAAGATTCAGGCAACCATTCGCAAGCCGATGATTAGGAAGTTCCGTGGATCTGTGCTTGAGGGCCATGCTTACAAGATGGCTTTCTTCGAGGTTGTGAGGAACACTGGTTCGTATCGTGCATGTCGTCATGATTATAAGCTGGTTTTCCATGCGAAGACTAGGGTCGTTAACTGTGATGGCGTTCCAATCCCGTTATATGGGCTTTCCTTGATGAGCACAGATGAAATAATTGGCACACAGGGGCGATATGATGGGATTATTGACCGCTGCCTCGTCGGAGAAGATGTCGGAGAGGAGTGGTCGCATGACAAGGTTTATCATTTTGGAACTGACGGACGACAGGGCAAGGTTAATTGCACCTTCTTTGGAGATTATGTCGACGTAGTGAACAATTACCTTGCGAGGGAGAGTGAGGAGCTTCCCGTTGTTGTGAATGTGATGAACACGACAACTATAATGTGGAATCCTGACATTCCCGAGGCCATTGAGTTTAAAAGAAGCTTGGCAGAACATGGATTTGAAACTGAGGCTGCGGTTGGGGCGATTGGAGAAGGACACAATGACCTCAGTATGAAGGATGATTTCCTTGGTTTTTATCCCGGGAAAACGATTAATGAGCTGCACATGACAGAGGAGGAGGGAAATTTTATAGTCATTGCAACGGTGGCTGCCATACTTGGGGATGATGCATGGTGGTATTCGGCGTGCTCTTGCATGAAAGCTGTGAATGAGGAGGATGGGGTTTTCTTCTGCCCAGTGTGCAAAGCTAATGTTAAGGAATTTACACCAAGGTTCAAGCTGAAGATTGAGGTCTTTGACGGTGATGACACAACTGCTTTCATTCTCTTTGACCAAGATGCCCAGTTTCTGCTCGGGAAGACATGTGCTGAATTTGTCGCAGAGGCAAAGGAAATGCTTTTCAAGGTTGACAAGGGTCCTGAGTATGCCTTTAGGTTTGATGATACTTTTAGGGTGAGGAGGATTTGTGTTGATCCTGAAATCATGAAAATGTTCAAAGAGTATGTTGTTATTACCACCCCTGAGAAGAATAAATTTATCCCACCATTCCCCACTCTTGCGGAAGCGAGTTCAAGTGAAACTGTAAAAGGGGCCGAGAAGAAGGTTGTGGATTTGTGTGGCGAGGTGCAGCTGGTTTCAGGAGGTCCTATTAAGGGAGACGGCGGTGGTGCTATTGGTGATAATGAAGGGAAATCTAATGCTAAATCATTCCTCACAGTGGACCCTGTTGTTTCCCCTTTTGCCATGACTGATGTGGTGGACTTGGAGAGTCAGGGGTATGGTGATGTGACCGCAGTGCAAAGTGAGAAACCTTTGGTGGATGAATTTAACCTAAAAAGAAGAAGAACATGA 1527 0.461 MAGMYDLVKDVFPGKQTWRLKVRIVRIWEMCPIDHPANPFAIEMVMMDAEGAKIQATIRKPMIRKFRGSVLEGHAYKMAFFEVVRNTGSYRACRHDYKLVFHAKTRVVNCDGVPIPLYGLSLMSTDEIIGTQGRYDGIIDRCLVGEDVGEEWSHDKVYHFGTDGRQGKVNCTFFGDYVDVVNNYLARESEELPVVVNVMNTTTIMWNPDIPEAIEFKRSLAEHGFETEAAVGAIGEGHNDLSMKDDFLGFYPGKTINELHMTEEEGNFIVIATVAAILGDDAWWYSACSCMKAVNEEDGVFFCPVCKANVKEFTPRFKLKIEVFDGDDTTAFILFDQDAQFLLGKTCAEFVAEAKEMLFKVDKGPEYAFRFDDTFRVRRICVDPEIMKMFKEYVVITTPEKNKFIPPFPTLAEASSSETVKGAEKKVVDLCGEVQLVSGGPIKGDGGGAIGDNEGKSNAKSFLTVDPVVSPFAMTDVVDLESQGYGDVTAVQSEKPLVDEFNLKRRRT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1023g00006 508 CDD RPA1_DBD_C 254 349 IPR047192 -
Sebi1023g00006 508 Pfam Replication factor-A C terminal domain 268 353 IPR013955 -
Sebi1023g00006 508 Gene3D - 6 110 IPR012340 -
Sebi1023g00006 508 PANTHER OS03G0429900 PROTEIN 254 356 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi1023g00006 508 CDD RPA1_DBD_A_like 19 107 - -
Sebi1023g00006 508 Gene3D - 251 387 IPR012340 -
Sebi1023g00006 508 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Sebi1023g00006 508 SUPERFAMILY Nucleic acid-binding proteins 251 383 IPR012340 -
Sebi1023g00006 508 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1023g00006 Sebi-Chr1023 60982 64127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1023g00006 13 347 Core DNA Replication Machinery Family AT5G08020 22.372 2.79e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1023g00006 - - lja:Lj6g3v0884310.1 297.745