Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1023g00002 ATGCTCAGTTTGGATGAGATGAGCAGGACTCACTTGATTTTGATTATAGGAATATGCATAGGCTTTGTTGTTGGAGTGGGTTTGGTATTTTCAATTTTATTCTGCTTCAGATGTGGAAGGAAGCGTACAAGGGTGGAGAAGAGCAGTTCTCAGGGAGTAGTGGCCATTCCTGTTCAAGTCAAAGGGGTTGATTCCAGCACAACATTATCAGACTCCAATGTGGCTCTGGAGTCACCCAGAACATCTGAGTGGAGTAACATGCCTTTATGGTTGGAAGGACTTAGGAGGAAGAATGTAGTTTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCCATGGAGCGTTTGGTCCTGTTTACAAAGCACAGATGTCTGCAGATGAGACTTTTGCAGTTAAAGTTCTTGGTACTAATTCAAGACAAGGAGAACAGGAATTTTTAACTGAGGTCCTATTACTTGGAAGATTACATCACAGAAACCTTGTGGGTTTGGTGGGATATGCTGCAGAAAGAGGACAGCATATGCTCCTTTACATTTACATGAGCAACGGCAGTCTTGCTTCTCATTTGTATGGCAAAAGTCATGAGCCATTGAGCTGGGATTTGAGACTTAGCATAGCCCTAGATGTTGCAAGGGGACTGGAATATCTACATTATGGGGCTGCTCCCCCTGTTGTGCACCGTGACATCAAATCTTCCAACATATTGTTGGACCAGTATATGAGAGCTAAGATCACTGACTTAGGGCTTTCCAGACCAGAGATGATCACACCTCATACATCAAATGCAGCCATGGAAAGTGAGGGCAAGGTTGGATGGGAAGAAATTGTGGATTCGCAACTGAATCGAAAATATGATGTTCATAAGCTTAATGACATGGCTTCACTTGCACTCAAATGTGTTAATGGCGTCTCCAAAATCCGACCTTCAATGAGGGATATTGTTCAAGCATTATCTCAGCTTTGTAAGAAGCATAGTAGAAAAGATAGCCGAGCATCTCCTGCTGCATTAAAGGAAGTGTCCATTGAAGTGGGCCAGCTAGAATCTCATGATTTTTCATCAATTGACGAGTGTTCAAAGGTGCTACGAAGATTGCATAGCCGATAA 1146 0.4241 MLSLDEMSRTHLILIIGICIGFVVGVGLVFSILFCFRCGRKRTRVEKSSSQGVVAIPVQVKGVDSSTTLSDSNVALESPRTSEWSNMPLWLEGLRRKNVVSACGIPKYSYKDIQKATSNFTTIIGHGAFGPVYKAQMSADETFAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVGLVGYAAERGQHMLLYIYMSNGSLASHLYGKSHEPLSWDLRLSIALDVARGLEYLHYGAAPPVVHRDIKSSNILLDQYMRAKITDLGLSRPEMITPHTSNAAMESEGKVGWEEIVDSQLNRKYDVHKLNDMASLALKCVNGVSKIRPSMRDIVQALSQLCKKHSRKDSRASPAALKEVSIEVGQLESHDFSSIDECSKVLRRLHSR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1023g00002 381 Pfam Protein tyrosine and serine/threonine kinase 120 297 IPR001245 GO:0004672|GO:0006468
Sebi1023g00002 381 PANTHER OS01G0750732 PROTEIN 282 344 - -
Sebi1023g00002 381 Gene3D Transferase(Phosphotransferase) domain 1 194 286 - -
Sebi1023g00002 381 ProSiteProfiles Protein kinase domain profile. 118 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1023g00002 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Sebi1023g00002 381 Gene3D Phosphorylase Kinase; domain 1 81 193 - -
Sebi1023g00002 381 SUPERFAMILY Protein kinase-like (PK-like) 103 331 IPR011009 -
Sebi1023g00002 381 SMART serkin_6 118 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1023g00002 Sebi-Chr1023 19459 23462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1023g00002 104 301 Receptor kinase-like Gene Family AT3G19300 47.525 7.11e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Sebi1023g00002 PK_Tyr_Ser-Thr 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1023g00002 - - gmx:100816549 508.449