Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1022g00010 ATGCTCCTTACCTTCTTAATTCTCCCTGTAATTGAGAAATCTAATGCAGAATCAGAGGACATTGCCATTTACTGGGGTCAAAATGATGATGAGGGGAGCCTAACAGAAACATGTGCAACAGGAAAATACTCTTATGTAATCATAGCCTTTCTGAACAAATTTGGGAATGGCAAAACCCCTGAAATCAACCTAGCAAGTCATTGTGACCCTGCTTCCAATGGTTGCACCACCTTAAGCACAGACATCAGGAATTGCCAATTGCAAGGGATCAAAGTCTTTCTCTCCATTGGAGGTGCAGATGGAGATTACAATCTAGCTTCCTCTGATGATGCTAAAAATGTTTCTGATTACTTGTGGAACAATTTCTTAGGGGGTGGCACTGGTAGCTCATCTTCACGCCCACTTGGGGATGTTATATTAGATGGTATTGATTTTGATATTGAGAATTCCACAGGACAACATTGGGAGGTACTTGCACATGACCTCAAGTCACGTAGCACCTCAACACAAGTTGTTTACTTAAGTGCAGCACCTCAGTGTCCATTTCCTGATGGTGAACTTGGTATTGCACTTGACACAGGGATTTTTGACTATGTTTGGATACAGTTTTATAATAATCCTGATTGTGAGTATACCCAAAGCAATGTCAATAACTTTTTGAATTCATGGAATCAATGGACAACATCATTGAAAGTGGGAAAAGTCTTCTTGGGGTTGCCAGCATCGCCTGCAGCAGCAAGTACTGGCTATGTTACAGCTGATTTGTTGGCATGTGACATTCTTCCTGTCATAAACAAGTCCCCTAACTATGGTGGTGTGATGTTGTGGACAACATACTATGATAAACAAAGTGAATACAGCACCCACATCAAAAGTTCTCTTTGCACACATCAAAACCCTCCTGGATGCGGAGGAAATGATTGCCACAAAGTAAAGTGGTGGATATGGCTTATCACTGGGGTGGGAGCAGCCCTTGCAATGTCTCTCATCTTCTACATGGGCTGTACCTTATGGAGAAAAGACAAAGCAGAAGTGGATGGAAATTTGAACCAAAACAAGTCATTACATGAAATTGGAGGCAGTGCAGTACTTCCTGACAAAGCAAGAAATATTGAAATAGAGGGAAGGACTGGTAATGAGGCCAAAATGTTCAGTTTTGAAAGCATTATTGCTGCCACAAACAATTTTTCATCTACTAATAAGCTGGGAGAGGGTGACTTTGGTCCTGTTTATAAGGGAACATTAAAAGATGGCCAAGAAATAGCAATAAGGCTACTTTCCAAAACTTCAAGAGAAGGGTTAATAGAGTTCATGAATGCAGCTAAGCTCATGGCCAAACTCCAGCACAGTAATCTCATAAGGCTTTTAGGGTTCTGCTTCCAGAAAGATGAAAGAATACTAGTGTATGAGTACATCTCCAAAAGAAGTTTGGACTTCTACTTGTTTGTGGGTGCATGTCATCAGATGATGCAATCAATGGCGTGGCAGCTTTGGAACTCAGGTCGAGCTCTAGAGCTAATAGACTCAGCACTAAATGAATCATGCACTCCAAATGAAGTATTGAGATATATTCATATTGGCCTCTTGTGTGTACAAGGCCATGCAGCAGGCATACCTACCATGTTAGATGTTGTTTCTTTTCTCTCAAATGATACAATTGAACTTGCTCAGCTGAAACAGCCAGCATTCTTCACCAATGTGGTTGGGGAAGACTCAGCTTCCTAA 1725 0.4128 MLLTFLILPVIEKSNAESEDIAIYWGQNDDEGSLTETCATGKYSYVIIAFLNKFGNGKTPEINLASHCDPASNGCTTLSTDIRNCQLQGIKVFLSIGGADGDYNLASSDDAKNVSDYLWNNFLGGGTGSSSSRPLGDVILDGIDFDIENSTGQHWEVLAHDLKSRSTSTQVVYLSAAPQCPFPDGELGIALDTGIFDYVWIQFYNNPDCEYTQSNVNNFLNSWNQWTTSLKVGKVFLGLPASPAAASTGYVTADLLACDILPVINKSPNYGGVMLWTTYYDKQSEYSTHIKSSLCTHQNPPGCGGNDCHKVKWWIWLITGVGAALAMSLIFYMGCTLWRKDKAEVDGNLNQNKSLHEIGGSAVLPDKARNIEIEGRTGNEAKMFSFESIIAATNNFSSTNKLGEGDFGPVYKGTLKDGQEIAIRLLSKTSREGLIEFMNAAKLMAKLQHSNLIRLLGFCFQKDERILVYEYISKRSLDFYLFVGACHQMMQSMAWQLWNSGRALELIDSALNESCTPNEVLRYIHIGLLCVQGHAAGIPTMLDVVSFLSNDTIELAQLKQPAFFTNVVGEDSAS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1022g00010 574 SUPERFAMILY (Trans)glycosidases 17 291 IPR017853 -
Sebi1022g00010 574 ProSiteProfiles Protein kinase domain profile. 396 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1022g00010 574 Pfam Protein tyrosine and serine/threonine kinase 399 483 IPR001245 GO:0004672|GO:0006468
Sebi1022g00010 574 PANTHER ENDOCHITINASE 6 292 - -
Sebi1022g00010 574 FunFam Acidic endochitinase SE2 19 294 - -
Sebi1022g00010 574 Pfam Glycosyl hydrolases family 18 21 281 IPR001223 GO:0005975
Sebi1022g00010 574 CDD GH18_hevamine_XipI_class_III 20 292 IPR045321 -
Sebi1022g00010 574 FunFam Putative LRR receptor-like serine/threonine-protein kinase 370 471 - -
Sebi1022g00010 574 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
Sebi1022g00010 574 SUPERFAMILY Protein kinase-like (PK-like) 382 485 IPR011009 -
Sebi1022g00010 574 Gene3D Phosphorylase Kinase; domain 1 364 471 - -
Sebi1022g00010 574 SMART tyrkin_6 396 548 IPR020635 GO:0004713|GO:0006468
Sebi1022g00010 574 Gene3D Glycosidases 19 294 - -
Sebi1022g00010 574 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 19 297 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1022g00010 Sebi-Chr1022 139893 142839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1022g00010 2 294 Glycoside Hydrolase AT5G24090 54.949 6.51e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1022g00010 Glyco_hydro_18 1.7e-24 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1022g00010 K01183 - adu:107464076 493.426