LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi1022g00007	ATGAGCAGAATTCTCCTTCTCCCTATATTGCTGTTCCTAATCATCTTACTTCACCCCTCTGAAGCCGACGAAGTTGCCGTTTACTGGGGTCAAAACACCAATGAGGGAAACCTTACTGAAACATGTGCAACAGGGAAATACTCTTATGTCAACATAGCCTTCCTTTCCACCTTTGGGAATGGCCAAACTCCTCAAATCAACCTGGCAGGTCATTGTGACCCTTCTTCTAATGGTTGCACTAAGATTGGGACAGACATTAAAAATTGTCAAAAGAAAGGGATCAAGGTGATGCTCTCCATTGGAGGAGGAGGAGCTGACTATTCTCTATCTTCCTCTGAGGAAGCTAAAAATGTTGCAAATTACTTGTGGAACAATTTCTTGGGTGGCGGCTCCTCATCACGCCCACTTGGGGATGCAGTATTAGATGGCATTGATTTTGACATACAGCTAAGTACATCGCATGTGGATGATCTTGCACTTTTCCTAAAGTCACACACAACAAGAAATCAGACTGTGTACTTATCAGCAGCACCTCAGTGTCCATTTCCTGATTCTTCACTGGGTAAGGCCCTTAATACTAGCCTTTTTGACTATGTCTGGGTACAATTCTACAATAATCCTCCATGTGATTATACACAAGGAAATTTCGATAACTTTGTAAGTACATGGAACCTATGGACGACAATTTTAGATGGATCGAAAAATTTTTTGGGGTTGCCAGCAGCTGAAGAAGCAGCTACAAGCGGTTATGTTCCACCTGATGTATTAACATCTAAGATCTTACCTGTTATAAACAAGTCACCAAACTATGGAGGAGTGATGTTGTGGTCAAGGTACGAGGATAAATTGAGCGGATACAGTACCAACATTACAATAAGAGTTACACCACAAATTCCTCCTCCTCCTCCTGTTACACCGCAAATAAATCCTCTATGTAATTCAAAGCTAAGTCTTACTGGGTGTAGAAGCCATGACGGTGGCTTCGTGGAGCGTTTTGGCTACATGTCCACGGTTGGCATCAAAGTTTATGATGGCTTGAACAATGGTACCAATTGCTGCGAGATCATATGTAGGAACAATTGTTCCTGCAATGCGTATGCCTCAATAAATCACATGAACAACACTGGATGCCAGATATGGGGCAAAGGATCCAAATTCATTAGAGATTCTGGGGAAAAAGCACAAACAATCTACATTGTTAAACACAAAGTAAACAGATGGTGGATATGGCTCATCATTGGGGTGGGAGCAGCCTTTGCAATACCTGTGATCTTCTATTTATGTTGTGCCTTGTGGAGAAAATATAAAGCAGAAGTGGATAGAAAAATAATGCAGAAGGAGATATTACATGAGATTGGTGGTAATGCAATGCTTTCAATGGTGTACGGCAAAGTCAAGAAAAGTAAGAACAGGGAAAAGACAAGCAACGAGGTCCAAATATTCACTTTTGAAACCATTGTTGCTGCCACAAACAATTTCTCAGTTGCTAATAAGCTAGGAGAGGGTGGTTTTGGTCCTGTTTATAAGGGAACATTGAGTGATCAGCAAGAGGTAGCAATAAAGCGACTATCTAAAAGTTCAGGACAGGGGCTGATAGAGTTTAAGAATGAAGCTAAGCTCATGGCCAATCTCCAGCACACTAATCTTGTAAAGCTTTTAGGCATCTGCATCCAAAGAGATGAAAGAATATTAGTCTATGAGTACATGTCTAACAAGAGCTTAGACTTCTACCTATTTGATTCAACTAGAAAGAATTTGCTAGACTGGAAAAAACGCTTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTCCACAAGTATTCAAGACTAAAGGTGATACATCGGGACCTGAAAGCAGGCAATATATTACTTGATGAAGAGATGAATCCTAAAATATCTGACTTTGGCATGGCTAGAATATTTGGTCTAAGAGCATCAGAAGAAAACACAAATAGAGTTGTTGGTACATATGGTTATATGGCTCCAGAGTATGCAATAAATGGTATTGTGTCTATCAAAATAGATGTATTTAGCTTTGGTGTATTGCTATTAGAGATTCTCAGTGGCAAGAAGAATAATAGTCGCTATCATTCAGATCGCCCACTCAGCCTCATAGGATTTGCATGGCAGCTCTGGAATGAAGGTAAACCTCTTGAGCTAGTAGACCCATCATTAAGTGAATTAAGTTCTCAGAATGAAGTTTTGAGATGTATTCATATTGGCCTCTTGTGTGTACAAGATCAAGCAAATGATAGGCCTACCATGTTAGATATTGTTTCTTTTTTATCAAATGATACTATCCAACTTCCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTGGTTATAGAGGAGTCAGAGCTTCCTTACAGCAGGCAAGAACATCATTCCTTAAATAGTGTAACAATTTCTAATATGTCTGGAAGATAA	2436	0.3998	MSRILLLPILLFLIILLHPSEADEVAVYWGQNTNEGNLTETCATGKYSYVNIAFLSTFGNGQTPQINLAGHCDPSSNGCTKIGTDIKNCQKKGIKVMLSIGGGGADYSLSSSEEAKNVANYLWNNFLGGGSSSRPLGDAVLDGIDFDIQLSTSHVDDLALFLKSHTTRNQTVYLSAAPQCPFPDSSLGKALNTSLFDYVWVQFYNNPPCDYTQGNFDNFVSTWNLWTTILDGSKNFLGLPAAEEAATSGYVPPDVLTSKILPVINKSPNYGGVMLWSRYEDKLSGYSTNITIRVTPQIPPPPPVTPQINPLCNSKLSLTGCRSHDGGFVERFGYMSTVGIKVYDGLNNGTNCCEIICRNNCSCNAYASINHMNNTGCQIWGKGSKFIRDSGEKAQTIYIVKHKVNRWWIWLIIGVGAAFAIPVIFYLCCALWRKYKAEVDRKIMQKEILHEIGGNAMLSMVYGKVKKSKNREKTSNEVQIFTFETIVAATNNFSVANKLGEGGFGPVYKGTLSDQQEVAIKRLSKSSGQGLIEFKNEAKLMANLQHTNLVKLLGICIQRDERILVYEYMSNKSLDFYLFDSTRKNLLDWKKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAGNILLDEEMNPKISDFGMARIFGLRASEENTNRVVGTYGYMAPEYAINGIVSIKIDVFSFGVLLLEILSGKKNNSRYHSDRPLSLIGFAWQLWNEGKPLELVDPSLSELSSQNEVLRCIHIGLLCVQDQANDRPTMLDIVSFLSNDTIQLPQPKQPAFFINVVIEESELPYSRQEHHSLNSVTISNMSGR	811

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi1022g00007	811	SUPERFAMILY	(Trans)glycosidases	20	289	IPR017853	-
	Sebi1022g00007	811	Pfam	Domain of unknown function (DUF3403)	766	811	IPR021820	GO:0004674
	Sebi1022g00007	811	FunFam	Acidic endochitinase SE2	23	294	-	-
	Sebi1022g00007	811	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	614	626	IPR008271	GO:0004672\|GO:0006468
	Sebi1022g00007	811	CDD	STKc_IRAK	499	764	-	-
	Sebi1022g00007	811	Pfam	PAN-like domain	348	381	IPR003609	-
	Sebi1022g00007	811	CDD	GH18_hevamine_XipI_class_III	24	290	IPR045321	-
	Sebi1022g00007	811	Pfam	Glycosyl hydrolases family 18	25	281	IPR001223	GO:0005975
	Sebi1022g00007	811	Pfam	Protein tyrosine and serine/threonine kinase	495	764	IPR001245	GO:0004672\|GO:0006468
	Sebi1022g00007	811	Gene3D	Transferase(Phosphotransferase) domain 1	569	775	-	-
	Sebi1022g00007	811	SUPERFAMILY	Protein kinase-like (PK-like)	475	797	IPR011009	-
	Sebi1022g00007	811	Gene3D	Glycosidases	23	293	-	-
	Sebi1022g00007	811	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	458	568	-	-
	Sebi1022g00007	811	Gene3D	Phosphorylase Kinase; domain 1	466	568	-	-
	Sebi1022g00007	811	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	569	772	-	-
	Sebi1022g00007	811	SMART	serkin_6	493	764	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi1022g00007	811	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	321	793	-	-
	Sebi1022g00007	811	ProSiteProfiles	Protein kinase domain profile.	493	769	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi1022g00007	811	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	23	297	IPR001223	GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi1022g00007	Sebi-Chr1022	127070	130327	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi1022g00007	10	294	Glycoside Hydrolase	AT5G24090	62.069	4.51e-127	380

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Sebi1022g00007		PK_Tyr_Ser-Thr	1.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi1022g00007	-		-	lang:109358482	1245.72