Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1021g00009 ATGGCTGAAAAGAGTTCAATTACTCATGCAGCAGTCAGACATCACTGTAGCAAATTGAGTAAACTTGATTTGGCTGATCAAGAATGGATAAATAGGATCCCAGAATGTCCAGTATATCACCCATCAGAGCAAGAGTTTGAGCATCCTTTAGTTTATCTACAGAAGATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCTGCTTCTAATCCAGCTTCTTTTGTCTTAATGAAAGAGAAAAAAGACTTCAAGTTTGAAACAAATGAGTTCTGGTATGAGATGGCACATGGAGAAAAGGGAACAGTTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCAAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGTGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTACATCATGTGTATTGCAATAAGATTTTAGCAAAACATGGAGAGGATGGAGCTTTCAAATTTCTTGCACATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTACAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCATATCATTCTGGTTTTAGTCATGACATCCCTTTTGCGGCTGAACAGTTCAAGAAAGTTATCAAGCTCTTCAATTACATTAGGTTCTCAGATATGCAACCTCTGCCATAG 903 0.3953 MAEKSSITHAAVRHHCSKLSKLDLADQEWINRIPECPVYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPIAASNPASFVLMKEKKDFKFETNEFWYEMAHGEKGTVEYGVNVEGTAFSCDPNDRLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLHHVYCNKILAKHGEDGAFKFLAHKTTMFPPSVLLQHDVAVYKAVQKPGEFVITFPRAYHSGFSHDIPFAAEQFKKVIKLFNYIRFSDMQPLP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1021g00009 300 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Sebi1021g00009 300 SMART JmjN_1 35 76 IPR003349 -
Sebi1021g00009 300 Pfam JmjC domain, hydroxylase 159 276 IPR003347 -
Sebi1021g00009 300 Pfam jmjN domain 37 69 IPR003349 -
Sebi1021g00009 300 Gene3D Cupin 24 93 - -
Sebi1021g00009 300 Gene3D Cupin 94 281 - -
Sebi1021g00009 300 SUPERFAMILY Clavaminate synthase-like 128 273 - -
Sebi1021g00009 300 ProSiteProfiles JmjC domain profile. 126 300 IPR003347 -
Sebi1021g00009 300 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 93 - -
Sebi1021g00009 300 SMART cupin_9 126 292 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1021g00009 Sebi-Chr1021 191149 193666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1021g00009 29 72 C2H2 Transcription Factor Family AT5G04240 45.455 1.21e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi1021g00009 JmjC 1.4e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1021g00009 - - gmx:100809650 459.144