Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1020g00007 ATGATGGTTTTCTCCCAAGGAACCTGCACTGTCAGTGACACTGACATCATGGATCCTTCCAATGCCCCAGATACTCCTCCACAAGTTTCCTCTGCAGTTGCAGATAACTTCTCTGACTACAAAAGGCTCAAATTCAGAACCTTTTTGAGAAAAATGATATGGGAGTTTGCTTTTGCATGTGTTGCTGTTCCTTGTGGTGGCAAAGACGATGACAAAGGCTTCAAAAAGAAAACTTTGGAGCACAACAAGGTGTGGCTTCTGGCTGAGTCTGGTGGGTGTGGAGCAGAATTGGCAAGTGCTGAGCCTCAATCGATTATGAAATGGAGGAAGATGGAGTCATTGGAGAGATGCATATCCCCAGTGGCCAACACTTTGATCAGGTTCAACTATGATGAAATTCTATCTGCTACTCGCAATTTCTCCAAAGGCAGAGTATTGGGGAGAGGAGGCTTGAGCTGTGTTTTCAGAGGAAAAGTTGGGTTTTTTAGGACTAGTGTTGCAATTAAACGGTTGAAGAATGATGACAAAGAGTGTGCCAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCAAAATCCAAATGTTGTTCCCCTTGTGGGATTTTGTATTGACTCAGAGGAGGGTTTGTTCTTGGTTTACAAGTATGTATCAGGGGGTAGCTTAGAGCATCACTTGCATGGAAAGAAGAAGAGTTTGAAGGGTGGTTTACCACTTCCATGGTCTGTGAGGTATAAAGTTGCAGTTGGGATTACAGAAGCTGTGGCTTATCTTCATAATGGAACAGAAAGATGTGTTGTTCACAGAGACATTAAGCCTTCAAACATTCTACTTTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTTCATGGACTTCAGCACCTTCAGTTCCTTTCCTTTGTAAAACTGTCAAAGGAACATTTGGTTATTTGGCACCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTAGGAGTTGTTTTGTTGGAACTCATAACTGGCCGAAAGCCAATTGAAGCAAAAAGGCCTCCAGGAGAGGAGAACTTGATCTTATGGGCTAAACCTTTGCTGAAAAAAGGTAAAGGAGCAATTGAAGAGTTGCTTGATCCTCAACTCAAGTACAGTTTGAGATACTCAGATCAAATGGCTCGAATGATTGATGCAGCAGCTGCTTGTGTTACAAATGAAGAATCTAGGAGACCTGGTATACATGAGATTCTTGCAATACTGAAAGGTGAACAAGAGCCTGTATTCTCTAGAAGAAGGAAATCTGGTTATCTAGGGAATGGATTCATGATTGATTGTTACCCTCAATTACAACAAACAAATAATGAGATGAAAAGTTACTTGGCTCTGGCAATGCAAGGAGTTCAAGAGTATGAGGATTATGATTATCTTTATGGTCGTTAA 1440 0.4097 MMVFSQGTCTVSDTDIMDPSNAPDTPPQVSSAVADNFSDYKRLKFRTFLRKMIWEFAFACVAVPCGGKDDDKGFKKKTLEHNKVWLLAESGGCGAELASAEPQSIMKWRKMESLERCISPVANTLIRFNYDEILSATRNFSKGRVLGRGGLSCVFRGKVGFFRTSVAIKRLKNDDKECAKAFCRELMIASSLQNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGKKKSLKGGLPLPWSVRYKVAVGITEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELITGRKPIEAKRPPGEENLILWAKPLLKKGKGAIEELLDPQLKYSLRYSDQMARMIDAAAACVTNEESRRPGIHEILAILKGEQEPVFSRRRKSGYLGNGFMIDCYPQLQQTNNEMKSYLALAMQGVQEYEDYDYLYGR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1020g00007 479 ProSiteProfiles Protein kinase domain profile. 140 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1020g00007 479 FunFam probable serine/threonine-protein kinase PBL7 101 217 - -
Sebi1020g00007 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Sebi1020g00007 479 SUPERFAMILY Protein kinase-like (PK-like) 121 422 IPR011009 -
Sebi1020g00007 479 SMART serkin_6 140 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1020g00007 479 FunFam Putative receptor-like serine/threonine-protein kinase 218 435 - -
Sebi1020g00007 479 Gene3D Transferase(Phosphotransferase) domain 1 218 434 - -
Sebi1020g00007 479 Gene3D Phosphorylase Kinase; domain 1 125 217 - -
Sebi1020g00007 479 PANTHER OS08G0249100 PROTEIN 115 430 IPR046958 -
Sebi1020g00007 479 Pfam Protein kinase domain 141 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1020g00007 Sebi-Chr1020 147415 150072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1020g00007 35 457 Trihelix Transcription Factor Family AT1G70460 34.579 1.24e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi1020g00007 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1020g00007 - - adu:107481060 696.427