Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1020g00004 ATGGCTCTGGCCAATGACAAAATTCCTTGTGCTTCAAGCATGAGCAGCAGAAAGTTTCAAACTTGTGCTCTTGATGAGTCTGCTATGGAGATTTCTCCTCATGGGGTCAAGGATTATCAAAAATCTCTTGCTGAAGAGGAAGATGGATCACAGAGTACTAATGGCCTCAGCAATGATTCAGCTTCAGCTATAACCCATTCTTCTCCTCTATGTGGCAGTGCAAATGGGTATGTTTATAAGAGCTCAAATTATCAACTTGAAGAAGCAGAATCTCTGATTAATTTCAAAGCCAATGAGTATAGCAACCTCATGCAAGGTAGTGAATCTGTTCTTAGCTTTCAGCAGAGCTGGTTGGTCTCCAATGAGAACAATTTGAACCAATGGAATCATATTAGTCCTAAAGGCACCACAAACTTGAGCATGGTTCAGGATTTCACTTGCTTTGAATCTTCCAGTGGCTATAGCTCCATGTTTAACAATGCAAAAGAGAAACAACATGGTGAAAGTTCATATGGGTGGCTATACTCTGAACCAAATGTCCCTGGTGATAGTCTCAAGGAGTCATCAACACAAGAATCAGTCTTAAAGAAGCGCTCTTCAATGGTTGAGAACATGCAAAATTCCAATGCCAAGAAGCCATGCACAACTGCAAGCAAAACAGCAAAACCCAAGTCAAACCCATCTAAAGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTTAAGATCCTACAAGAACTTGTACCCAACGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCCCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTGTCATCTCAAAGATGA 945 0.4127 MALANDKIPCASSMSSRKFQTCALDESAMEISPHGVKDYQKSLAEEEDGSQSTNGLSNDSASAITHSSPLCGSANGYVYKSSNYQLEEAESLINFKANEYSNLMQGSESVLSFQQSWLVSNENNLNQWNHISPKGTTNLSMVQDFTCFESSSGYSSMFNNAKEKQHGESSYGWLYSEPNVPGDSLKESSTQESVLKKRSSMVENMQNSNAKKPCTTASKTAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1020g00004 314 Gene3D - 222 284 IPR036638 GO:0046983
Sebi1020g00004 314 MobiDBLite consensus disorder prediction 35 61 - -
Sebi1020g00004 314 MobiDBLite consensus disorder prediction 182 239 - -
Sebi1020g00004 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 286 IPR036638 GO:0046983
Sebi1020g00004 314 MobiDBLite consensus disorder prediction 182 233 - -
Sebi1020g00004 314 Pfam Helix-loop-helix DNA-binding domain 237 277 IPR011598 GO:0046983
Sebi1020g00004 314 MobiDBLite consensus disorder prediction 46 61 - -
Sebi1020g00004 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
Sebi1020g00004 314 FunFam Transcription factor bHLH83 225 284 - -
Sebi1020g00004 314 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 284 IPR045843 GO:0003700|GO:0006355
Sebi1020g00004 314 SMART finulus 233 282 IPR011598 GO:0046983
Sebi1020g00004 314 CDD bHLH_AtIND_like 228 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1020g00004 Sebi-Chr1020 63738 65275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1020g00004 76 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 46.586 1.35e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi1020g00004 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1020g00004 - - gmx:106795957 447.588