Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1020g00002 ATGGAATTGGAAAGTACTCCTTCTCCTCCGCCGTGTGATGGCACTGAAATAGAGGCAACGCCGGTGGCCGTACGGCGAGCCATGGAGCTGCTTCAGATGGACGATCCAGATTTGAAGATCCAAGCCGCGCGTGAAATTCGCCGTCTCACTAAGAACTCTCACCGTTGCCGCCGTCAGCTCCGTCAAGCCGTTGCTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCAAATGAACCCGCGCTTCTCGCCTTGCTTAACCTCGCCGTCCAAGACGAAAAGAACAAAATTAACATTGTGGAAGCTGGTGCATTAGAACCAATAGTTAGTTTCCTCAAGTCTCAAAATCCCAATATGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTACAACCAACAAACCAATTATTAGTGCTTATGGCACCATTCCTCTTCTTGTGGAGATTCTAAGAGATGGAAGCTCACAAGCTAAAGTTGATTCTGTAATGGCTCTGTCCAATTTATCAACACACCCTGACAACCTCAGCATCATTCTTGAAACAAATCCAATCCCTCTAATAGTTGATCTTCTCAAGACCTGTAAGAAATCCTCAAAAACAGCTGAAAAATGCTGTGGTTTGATAGAGTCCTTGGTGGGTTATGATGAGGGAAGAACTTCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGGACTCCTCAAAGTAGGGAACATGCTGTTGGTGCACTGCTTACAATGTGCCAAAGTGATAGGTGTAAATACAGAGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGTTAACTGTTCAAGGAACACCAAAGTCTCAGCCAAAGGCACGTACCCTTTTGCAGTTACTAAGAGAATCCCCTTATTCAAGATCTGAAGTTGAACCTGACACTCTTGAGAACATAGTGT 958 0.4551 MELESTPSPPPCDGTEIEATPVAVRRAMELLQMDDPDLKIQAAREIRRLTKNSHRCRRQLRQAVAPLVSMLRVDSPESNEPALLALLNLAVQDEKNKINIVEAGALEPIVSFLKSQNPNMQEYATASLLTLSASTTNKPIISAYGTIPLLVEILRDGSSQAKVDSVMALSNLSTHPDNLSIILETNPIPLIVDLLKTCKKSSKTAEKCCGLIESLVGYDEGRTSLTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRSEVEPDTLENIV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1020g00002 319 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 62 104 IPR000225 GO:0005515
Sebi1020g00002 319 Gene3D - 12 318 IPR011989 -
Sebi1020g00002 319 SUPERFAMILY ARM repeat 24 307 IPR016024 -
Sebi1020g00002 319 PANTHER U BOX DOMAIN-CONTAINING 16 301 - -
Sebi1020g00002 319 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 187 IPR000225 GO:0005515
Sebi1020g00002 319 SMART arm_5 134 174 IPR000225 GO:0005515
Sebi1020g00002 319 SMART arm_5 175 217 IPR000225 GO:0005515
Sebi1020g00002 319 SMART arm_5 52 91 IPR000225 GO:0005515
Sebi1020g00002 319 SMART arm_5 93 133 IPR000225 GO:0005515
Sebi1020g00002 319 SMART arm_5 219 259 IPR000225 GO:0005515
Sebi1020g00002 319 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Sebi1020g00002 319 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 141 IPR000225 GO:0005515
Sebi1020g00002 319 FunFam U-box domain-containing protein 4 12 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1020g00002 Sebi-Chr1020 24960 30453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1020g00002 24 301 U-box Gene Family AT2G23140 32.143 4.89e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1020g00002 - - gmx:100793971 483.796