Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi101g00034 ATGGATGAAGAGTTAGCTCTAGAGTTTATTGGTGACAAGAATTTGCGGGCTCACAAGGAATGTGAAGAAATGGTTTCTGAACCAGCTGAAGAGGATATAACCAGCAACCTGGAAAAGTCGGGAAAAAGATCTAGGACCTCAATGGAGGGGCAGAGCTTGAGTAGTTGCTGCTCAGAGGATGATGACTCTAATGCTTCTCAGCAGGAGCTAAATGGTGGAGGGTCTTCAAGCTTGAGCCTGAAGGATTCTGTAGCTTTGAAATTAAAGGGAAAATCAAGATCTAGTATAGGTTCTGCTATTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTGGTCCCCAATGGAACCAAGGTGGATATATGCACCATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGGTAATAACTTGA 468 0.4124 MDEELALEFIGDKNLRAHKECEEMVSEPAEEDITSNLEKSGKRSRTSMEGQSLSSCCSEDDDSNASQQELNGGGSSSLSLKDSVALKLKGKSRSSIGSAIDPQSVYAKKRRERINERLRILQNLVPNGTKVDICTMLEEAVQYVKFLQLQIKVIT 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi101g00034 155 CDD bHLH_AtIND_like 101 154 - -
Sebi101g00034 155 Gene3D - 102 154 IPR036638 GO:0046983
Sebi101g00034 155 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 32 153 IPR045843 GO:0003700|GO:0006355
Sebi101g00034 155 Pfam Helix-loop-helix DNA-binding domain 108 148 IPR011598 GO:0046983
Sebi101g00034 155 FunFam Basic helix-loop-helix transcription factor 99 155 - -
Sebi101g00034 155 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 153 IPR036638 GO:0046983
Sebi101g00034 155 MobiDBLite consensus disorder prediction 46 79 - -
Sebi101g00034 155 SMART finulus 104 153 IPR011598 GO:0046983
Sebi101g00034 155 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Sebi101g00034 155 MobiDBLite consensus disorder prediction 22 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi101g00034 Sebi-Chr101 1417266 1418195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi101g00034 52 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 65.094 3.42e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi101g00034 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi101g00034 - - gmx:100817334 181.8