Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi101g00025 ATGGCAAGGAGGCTAATGATCAATGTGCTTGAGGGGCCCACTTTAATTGGGCTTCAATGCGTCCACGAGGACACAAAAGCTGTCTACCATAAAATGCAAGCAGATAATGGCAAATTGTTTATTGGTGGAATATCATGGGATACAAATGAAGAGCGACTCAAAGAGTATTTTAGTACTTATGGGGAGGTCATGGAATCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTTGGTTTCATTGTCTTTTCTGACCCAGCTGTTGCTGAAAGAGTGACAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTAGGGATGACCAGAACATACTGAGTAGAAACAGTAGCAGCGTACATGGTTCTCCAGGTCCATGCCGCCCAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTTAAAGAGAGTGATTTCAAAAACTACTTTGATCAGTTTGGGACTATAACAGATGTTGTTGTGATGTATGACCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATAACTTATGATTCTGAGGAAGCTGTTGACACAGTCTTACTCAAGACTTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGTGCAGTTCCTAAGGAGCTATCACCAGGACCAAACCACAGCCCACTTGCTGGATATAATAACTATGGTCTTAGTAGGGTCAATAGCTTCTTAAATGGTTTCACTCAGGGACATACTCCAAGTAATGTTGGACTTCAGGTGGATGGTAGATTTAGTCCTGTTGCTGGTGGTCGAAGTGGATTAGCTCCATTTGGTTCTGGTTATGGTATGAGTGTAAATTTTGAGCCTGGATTGAACCCTGAATTTGGGGGAAATGCAAATTTCAATAGTAATCTTAGCTATGGCCGAGGATTAAATCCTTATTATATTGACAGTTCAAATAGGTTTGGCAGCTCTATCAGATATGATGGTGGTAATGGTGGAAGTAATTCTTTCTTCAGCTCTGGAGTGGGAGAGTTGAAAGAAACACATTTGGCAATACTGGAGTCAGCTGGGGTTCTTCATCAATTTCTGTTCAAGGGGGGGAACAATGTATCACAAAGTAATGGCAACCTTGGCTTTGGAGGTGCCAACAACAATTATGGTTTGGGGACTGGAGGGTCCAGAAGAAGCAGTGGTACCGACATGGCCCCAATATCATCATACTCTGCGTCAAATGGTGGACTTGATGGGACATTATCTGACTTATACAATAGCAGTTCAGTTTATGGTGACACAACTTGGCAATCTTCAAATTCTGACCCAGATGGATCTGGTCCCTTTGGTTTTGGACTTGGTGGTGCAGCTTCAGGTGTTTCTGCCAAAAGCTCTCTAGGTTATGTTGGAGGTTATGCAGTTAATAAGAGACAGCCAAATAGGGGAGTTTCTCAACTCTGGGACAGAATTCTTGCTGTAGTTTCTGTGAGATTCTGTGTTTAA 1488 0.4241 MARRLMINVLEGPTLIGLQCVHEDTKAVYHKMQADNGKLFIGGISWDTNEERLKEYFSTYGEVMESVIMKDRTTGRARGFGFIVFSDPAVAERVTKEKHNIDGRMVEAKKAVPRDDQNILSRNSSSVHGSPGPCRPRKIFVGGLASTVKESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDTVLLKTFHELNGKMVEVKRAVPKELSPGPNHSPLAGYNNYGLSRVNSFLNGFTQGHTPSNVGLQVDGRFSPVAGGRSGLAPFGSGYGMSVNFEPGLNPEFGGNANFNSNLSYGRGLNPYYIDSSNRFGSSIRYDGGNGGSNSFFSSGVGELKETHLAILESAGVLHQFLFKGGNNVSQSNGNLGFGGANNNYGLGTGGSRRSSGTDMAPISSYSASNGGLDGTLSDLYNSSSVYGDTTWQSSNSDPDGSGPFGFGLGGAASGVSAKSSLGYVGGYAVNKRQPNRGVSQLWDRILAVVSVRFCV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi101g00025 495 SUPERFAMILY RNA-binding domain, RBD 136 224 IPR035979 GO:0003676
Sebi101g00025 495 FunFam Heterogeneous nuclear ribonucleoprotein 1 134 221 - -
Sebi101g00025 495 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 32 476 - -
Sebi101g00025 495 Gene3D - 35 119 IPR012677 -
Sebi101g00025 495 Gene3D - 134 220 IPR012677 -
Sebi101g00025 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 113 IPR000504 GO:0003723
Sebi101g00025 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 214 IPR000504 GO:0003723
Sebi101g00025 495 SUPERFAMILY RNA-binding domain, RBD 29 130 IPR035979 GO:0003676
Sebi101g00025 495 SMART rrm1_1 138 210 IPR000504 GO:0003723
Sebi101g00025 495 SMART rrm1_1 38 109 IPR000504 GO:0003723
Sebi101g00025 495 FunFam Heterogeneous nuclear ribonucleoprotein 1 36 118 - -
Sebi101g00025 495 CDD RRM1_hnRNPA_hnRNPD_like 39 109 - -
Sebi101g00025 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 196 IPR000504 GO:0003723
Sebi101g00025 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 100 IPR000504 GO:0003723
Sebi101g00025 495 CDD RRM2_Hrp1p 138 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi101g00025 Sebi-Chr101 1185339 1189582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi101g00025 39 310 Eukaryotic Initiation Factors Gene Family AT1G71770 28.571 2.85e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi101g00025 K14411 - gmx:100795907 650.973