Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi101g00011 ATGCTTCCTATGCGTCAGAAATCGCAGGTTGGAGGACTACAAACATCACTATCTCTAGTTTCTTCAGATCCTCACCTCTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCAACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCCACAGCTGATTTAAAGAAGATGGAGAATGGGAAAGCAGAGATTAATTGCCTTGAGCAGTCAGTTATTCATCGTGTTTCTAGTGCAGACAAAATAACTCTTCAGGACATCGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATGCATCGCCTTCCCGAGGAGTTTCTAGATGAGATGAAAAATGGTCTTCGAGTTATCCTTGAGGGTGGAAATGGTTCACAACATAGGGAGGAGTTTTTCATTTTGCAGAAGCTTGTGCAGAGTAGAACTGATTTAACACCCAAGACACTGATTAGAGCACATCGTGCGCAGCTTGAAATTCTTGTTGCAATCAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGGTTGAAATCTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAGCCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACAGTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGATGTGATTTGTGCTCTCATTGGACTCACACAGATTGTGCCATCCGTGAGCAACTTATTTGCACGGGCCCTTCCATGAAGAGTGGAGCAGGATCAAGTGAAATGGTTTTTAGGTGTCAAGCATGCAATAGGACATCGGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCGCCATCTTGGGAAGGAGAGGCCTTCATGAGGGAACTGGATTATGTAAGTAGGATCTTTCATGATAGTAAATACCCCCGAGGGAGGAAACTACTTTGGAAATGTGATGATCTCAAGGAAAAATTGAAAAGTAGAAAAATGGACTCAAAGGCTGCTTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTCCAAAGGGCCTGGAAAATGGAGAAAGTGGAAGGTTGATTGCACCACTGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGTTTGGCTCTTGATGCTTGTGATCGTGAACTAGCAGACAAAGCCAGGGAAGTGACAGAACTCAAGATGGAGAGGCAGAAAAAGAAGTTGCAGATAGAAGAACTGGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAATTAAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCACTTGCAAAGCAAGACAAATCAGAGGAAGAATTCACTAGCAATTACCTGAAACAACGATTAAGTGAGGCTGAGGCTGAGAAGCAATATCTGTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTTTCACAGAGCAGTGGTGGTGGTGGTGACCCCTCTCAAATGCTGATGTATTCAAAAATTCATGATCTGCTATATAGTGTTCCTTCCAAGGCAGACAGCCAGCCTAATTTACGCCACCCGTTCCGGACAAATCCGTAA 1698 0.434 MLPMRQKSQVGGLQTSLSLVSSDPHLSPDEPRSNSDNLRESPTESASSQETWPTADLKKMENGKAEINCLEQSVIHRVSSADKITLQDIARESVDIICEKMHRLPEEFLDEMKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTPKTLIRAHRAQLEILVAINTGIQGFLHPSISLSQTSLVEIFGYKRCRNIACQSQLPADDCTCEICTNSNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSMKSGAGSSEMVFRCQACNRTSELLGWVKDVFQHCAPSWEGEAFMRELDYVSRIFHDSKYPRGRKLLWKCDDLKEKLKSRKMDSKAACRAILMFFQELEVDSPKGLENGESGRLIAPLDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLSEAEAEKQYLYEKIKLQESSRVSQSSGGGGDPSQMLMYSKIHDLLYSVPSKADSQPNLRHPFRTNP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 183 204 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 445 465 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 157 172 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 229 249 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 302 321 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 100 122 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 142 157 IPR004082 -
Sebi101g00011 565 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 484 506 IPR004082 -
Sebi101g00011 565 Pfam PHD - plant homeodomain finger protein 192 315 IPR032881 -
Sebi101g00011 565 MobiDBLite consensus disorder prediction 1 58 - -
Sebi101g00011 565 PIRSF UCP025218 1 552 - -
Sebi101g00011 565 MobiDBLite consensus disorder prediction 38 55 - -
Sebi101g00011 565 CDD PHD_OBE1_like 222 281 IPR047578 -
Sebi101g00011 565 SMART PHD_3 222 282 IPR001965 -
Sebi101g00011 565 Pfam Coiled-coil region of Oberon 410 544 IPR032535 -
Sebi101g00011 565 Coils Coil 416 485 - -
Sebi101g00011 565 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 22 546 IPR004082 -
Sebi101g00011 565 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi101g00011 Sebi-Chr101 777199 779536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi101g00011 192 294 PHD Gene Family AT5G57380 32.075 1.52e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi101g00011 - - gmx:100781890 1018.84