Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi101g00006 ATGGAGAAAGTGCCTGAGATTGAAGAACTGCTGAGCCACCAAGCTTTACCTCCACACCTCCTGATGTGCTGCCTAAAGATGAAACAACAGAACAATGGCCCTACAAAGTATTCTATTATCAGTAGGCTGGGGTTGGACCACAGGAAAATGCGTACCTTTGTTGATAATCTCTTCAAAGTGCTTCTAATGCTCCTGATGCAATTTTTTCCAGTTACTATTACTTCAGAAGATAAAAGAACTGTTGAAAGCAAGGGCATTAGGAAAAAGGTCCTCTTCCGCAAAATAAATTTGCGTACAAAATATTGCTTGAGGAAATCATTTGCAAAGTGTAGTGCTCAGAACCCTGGTGCTAATGGAAGCCCTCGCGAGGAAACTAAAAGGATTGAGTCAGATGCCAATTGTCAGGCCGATGCTTTGAGAGTGCTTGATATTGGCTCCCTTGGTAAGGCAATCTTTTTTCATGATGACCCGGGTAATTTCACTGATATTGGAGGTGGAGTAGCAGGAGTTCAGGGTTTACATTCCAGTTTTCGCCTTACAGAGGGAGGATTTTCTCTCAATATGGATGTGTCCACAACGGTGATCTTAAAACCTGGACCTGTAATTGATTTTCTCCTTTCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCGAAGGCCAAAAAAGTGCTTAAAAATTTAAGGGTGCTTGCAACACCTCGTAATTGGGAATTTAAAATTTCTGGCTTGAGCGAGAAACCCTGCATTCAGCAACTTTTTAGTATGAAGGTGAAAAGTGGAAACAACAACAGTGGCGAGCAGACAGTGGATATTACTGTATATGAGTATTTTGCTAAACACTGTGGCATAGAGCTGACCTCTTCTGCTTATCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCAACTATCTGCCCTTGGAGCGCTACACCAAGGCATTATCTCCAATGCAAAGAGCATCTTTAATGGAAAAATCACGCCAAAAGCCACAGGATAGAATAAAAATTCTGACAAATGCTGTAGGAAATTATTGCTACGATGATGACCCTGTTCTTGGTGCATGTGGCATTTCTGTTGATAAGCAATTGACTCCGGTTGAAGGTCGGGTTCTTGAGACACCAAAGTTGAAGATTGGCAAGAATGAGGACTGCTTTCCCCATAATGGAAGGTGGAGCTTTAATAAAAAGACACTTCTTAAACCATCACATATTGATTTTTGGGCTGTTGTCAACTTTTCTGCACGTTGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTATGTTTGACCTGCTTATATCAAAACTTACTAAAGAACCAAAGTTGATTCTCTGTGTCTTGCCTGAGAGGAAAAATTGTGACATTTACGGGCCTTGGAAAAAGAAGTGTCTGAGTGAATTTGGTGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTGGGAGGTATAAATTCTCTGCTGACAATAGAGCATTCTGGGAAACTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTTTCTCATGGTTCCCCTGGTCAGTTAGATATTCCATCAATAGCAGCGGTTGTCGGATCTCGGCGTTGGCCTCTGATTTCAAGGTATAGAGCATCTGTGAGAACACAATCATCCAAGGTGGAGATAATTGATGCTCTATATACAAGCCTTTGGATAATGGGAATGATGATGTGTTGCTTGGTCCAAGTCTCAACTCTTGATAGGGATTTGGATAGTCAAGGAAGTGTAGTTGTCTTCTTTAGTACTCATGAAAGCCTTGAGCATTATGGTAGTATGGTGGATGGGGTGGAAGATGAGAAATCCGTGGAGAAAGAAGTTAGGTGA 1923 0.4165 MEKVPEIEELLSHQALPPHLLMCCLKMKQQNNGPTKYSIISRLGLDHRKMRTFVDNLFKVLLMLLMQFFPVTITSEDKRTVESKGIRKKVLFRKINLRTKYCLRKSFAKCSAQNPGANGSPREETKRIESDANCQADALRVLDIGSLGKAIFFHDDPGNFTDIGGGVAGVQGLHSSFRLTEGGFSLNMDVSTTVILKPGPVIDFLLSNQNVREPRYIDWAKAKKVLKNLRVLATPRNWEFKISGLSEKPCIQQLFSMKVKSGNNNSGEQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPNRPNYLPLERYTKALSPMQRASLMEKSRQKPQDRIKILTNAVGNYCYDDDPVLGACGISVDKQLTPVEGRVLETPKLKIGKNEDCFPHNGRWSFNKKTLLKPSHIDFWAVVNFSARCDTSYITRELIKCGMSKGIMFDLLISKLTKEPKLILCVLPERKNCDIYGPWKKKCLSEFGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLTIEHSGKLPLIKDTPTMILGMDVSHGSPGQLDIPSIAAVVGSRRWPLISRYRASVRTQSSKVEIIDALYTSLWIMGMMMCCLVQVSTLDRDLDSQGSVVVFFSTHESLEHYGSMVDGVEDEKSVEKEVR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi101g00006 640 ProSiteProfiles Piwi domain profile. 451 570 IPR003165 GO:0003676
Sebi101g00006 640 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 135 594 - -
Sebi101g00006 640 Gene3D - 441 512 - -
Sebi101g00006 640 Pfam Argonaute linker 1 domain 152 195 IPR014811 -
Sebi101g00006 640 Gene3D paz domain 192 321 - -
Sebi101g00006 640 Pfam Argonaute linker 2 domain 335 379 IPR032472 -
Sebi101g00006 640 Gene3D - 372 440 - -
Sebi101g00006 640 SUPERFAMILY PAZ domain 193 348 IPR036085 GO:0005515
Sebi101g00006 640 Pfam PAZ domain 202 322 IPR003100 GO:0005515
Sebi101g00006 640 SMART Piwi_a_2 451 640 IPR003165 GO:0003676
Sebi101g00006 640 SUPERFAMILY Ribonuclease H-like 445 583 IPR012337 -
Sebi101g00006 640 CDD PAZ_argonaute_like 198 310 - -
Sebi101g00006 640 Gene3D - 518 617 IPR036397 GO:0003676
Sebi101g00006 640 SMART DUF1785_2 145 198 IPR014811 -
Sebi101g00006 640 Pfam Piwi domain 451 602 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi101g00006 Sebi-Chr101 261291 265974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi101g00006 132 582 Eukaryotic Initiation Factors Gene Family AT5G43810 31.961 2.63e-66 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi101g00006 K11593 - gmx:100778875 754.592