Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1019g00004 ATGGATGCCGCCGTCAAGCCGGAATCCGAATCCGCAACGAGGAAAGTTTGCGTCGTGAATGGTTACATTGTTTACACTCGAGCGAAGAGGTCCTTAAATTCGTGTAACGGTTTCTCCGAGGATGGAGAATTCAAGAGATTCAAGTCAAATGCGGAGGTTCCGGTTAAAACGGAGAACGGAGTGGATTGCTGCATGGGAAAGGATAGCGTGTGTGATGAGGTGAAGAGCGAGAATAAAGAGGTTGATGTGAGGACATTCAAGCGGAATACGCGATCGACGTTGAAAGCAAATGTTGTTGAGTCTGGTGGTGAGAAGACAGGGAGTGAGCTAGAACAAGGTGGTGCTCCTGTTGCGAATGGTAAAACTGATGGTGGAACTCGAAGAAGCAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTTAACAGGAAGCCCATGACTGTGAAGGAGCTCTTCGATACAGGTTTACTTGATGGAGTCTCTGTGGTTTACATGGGCGGCATTAAGAAGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCGCAGTCTCCTAGACCAGTGCCATTCTCCAGTCCATCCAGTACTTCCAAGCAATCTGTCTCCTCAAAAATAAATAGACCTTGGAAGAAAAGAACGAAGGACCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAGTTACTTGAAGGTTTTAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGTGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCGCTCTCAAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGCATTCCCCGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCACACAATGCCAATGCTATGGCAGCTGGAAGGATTGAAGGAGTTGATCCTATTGAACAGATAACCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCGGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATAATCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAATTGCCGGAAGGGAATTGGCTCTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACCTTTTGGTTAAGGGGGCTGAGAGACTTCCTGAGTCTCTCTTGAATGTTATAAAGAAAAAGCAAGAGGAAAAAGGATTAGATCCCATCAACGATGTTGATGTAACATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTCAATCCTATAGTCGATGCAACTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTACGTATTTTTGGCACGGATATCGCTGAGCTTCCTTTAGTTGCAACAAGTAACAGGAACCATGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATTGAGAGGCTCTTGGCTTTCTTGAATGTTAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTTAGCAAGGTGAAACCGGACCAGAGCATCAAATGTAGCATCCTTTGTTTGAATAAATTATATAGGATGCAAATGCCTCGCAAGATTATAAAGCTTAGTGGTGCACAAGACTTTGTGTCTTTGCTAACAAGTATTGTGAGGGGGAGACACCATCACCCCAAGAGGCAAAAGGACAAATGTGACAATGCCAAATGGGCTTCCAAGCTAATTTCAGACTACAATGTGGCTCTTGTTCTCACAGTTGACTTAAAGGGCTGTGGTAACTTCAGTAGTGTGCAGAAAGCAGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACTCTCATCATAATTGACTCTGGTATATACAGGGAGAAGGTAGTGGTTGAGGCCAACAAAACAAACTTGATACTTCAGGGTAAAGGGTATCTTGATACAATCATAGAATGGAATGACACTGCAAATTCCACTGGTGGGACTTCCTATAGCTACTCGTTTGGTGTATTTGCTTCTAAGTTCACTGCTTATAATATCAGCTTTAAGAACACTGCCCCTCCACCATCACCAGGAGAAGTTGGGGCACAGGCAGTGGCATTGAGAGTCACAGGTGATCAAGTTGCATTCTATGGATGTGGATTTTATGGAGCACAGGACACACTCAATGATGACAGTGGGAGACATTACTTTAAAGAATGTTTCATACAGGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTACCATAAACTCAATAGCAAAAGAAGATAGAAATGATTTTGGGGTCAGCGGGTCGATCACAGCACAAGGGAGGCAATCAATGAAGGAGGAAACAGGGTTTTCATTTGTGAATTGTAGCATTGTTGGGAGTGGGAAAGTGTGGCTTGGAAGAGCATGGGGAGCCTCTGCCACTGTGGTCTTCTCAAAAACTTACATGTCTGATGTTGTAGCTGCTGAAGGATGGAACGATTGGAGAGACCCCTCTAGAGACCAGTATCTATCTCTAACTCCTTGTATCATTTTTATATCTCTTTTTCCTATGTTCTATGGAGCGTGTTTTTTGGGGAGTATCATTGCTTGGGAGCAGGAGCAAATTATTCATCTAGAGTCTCTTATGCGAAACAACTCAGGGATTACGAAGCAATCTCCTACATGA 3078 0.436 MDAAVKPESESATRKVCVVNGYIVYTRAKRSLNSCNGFSEDGEFKRFKSNAEVPVKTENGVDCCMGKDSVCDEVKSENKEVDVRTFKRNTRSTLKANVVESGGEKTGSELEQGGAPVANGKTDGGTRRSKLELKMSKKIVVNRKPMTVKELFDTGLLDGVSVVYMGGIKKVIPPSQFEIHACKQYRRAAQSPRPVPFSSPSSTSKQSVSSKINRPWKKRTKDQRLHKLVFEEDGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTVVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAHNANAMAAGRIEGVDPIEQITNRCIRIVKDIEAELSGCALCRGVDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLNVIKKKQEEKGLDPINDVDVTWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDATSGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKVKPDQSIKCSILCLNKLYRMQMPRKIIKLSGAQDFVSLLTSIVRGRHHHPKRQKDKCDNAKWASKLISDYNVALVLTVDLKGCGNFSSVQKAVDAVPESSSDTTLIIIDSGIYREKVVVEANKTNLILQGKGYLDTIIEWNDTANSTGGTSYSYSFGVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQVAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNGRSLYEDCTINSIAKEDRNDFGVSGSITAQGRQSMKEETGFSFVNCSIVGSGKVWLGRAWGASATVVFSKTYMSDVVAAEGWNDWRDPSRDQYLSLTPCIIFISLFPMFYGACFLGSIIAWEQEQIIHLESLMRNNSGITKQSPT 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1019g00004 1025 SUPERFAMILY Pectin lyase-like 718 969 IPR011050 -
Sebi1019g00004 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 394 IPR013083 -
Sebi1019g00004 1025 Pfam Pectinesterase 723 967 IPR000070 GO:0030599|GO:0042545
Sebi1019g00004 1025 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 306 383 - -
Sebi1019g00004 1025 Gene3D - 716 977 IPR012334 -
Sebi1019g00004 1025 MobiDBLite consensus disorder prediction 194 211 - -
Sebi1019g00004 1025 Pfam Tify domain binding domain 257 303 IPR032308 -
Sebi1019g00004 1025 SUPERFAMILY FYVE/PHD zinc finger 399 461 IPR011011 -
Sebi1019g00004 1025 PANTHER AUTOIMMUNE REGULATOR 198 652 - -
Sebi1019g00004 1025 MobiDBLite consensus disorder prediction 190 219 - -
Sebi1019g00004 1025 CDD PHD1_AIRE 319 359 - -
Sebi1019g00004 1025 SUPERFAMILY FYVE/PHD zinc finger 306 364 IPR011011 -
Sebi1019g00004 1025 ProSitePatterns Pectinesterase signature 2. 870 879 IPR033131 -
Sebi1019g00004 1025 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 404 466 - -
Sebi1019g00004 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 466 IPR013083 -
Sebi1019g00004 1025 Pfam PHD-finger 320 361 IPR019787 -
Sebi1019g00004 1025 SMART PHD_3 319 360 IPR001965 -
Sebi1019g00004 1025 SMART PHD_3 407 464 IPR001965 -
Sebi1019g00004 1025 ProSitePatterns Zinc finger PHD-type signature. 320 359 IPR019786 -
Sebi1019g00004 1025 ProSiteProfiles Zinc finger PHD-type profile. 317 362 IPR019787 -
Sebi1019g00004 1025 MobiDBLite consensus disorder prediction 99 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1019g00004 Sebi-Chr1019 88907 99865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1019g00004 214 659 PHD Transcription Factor Family AT2G36720 61.883 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi1019g00004 Pectinesterase 6.1e-57 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1019g00004 - - gmx:100802562 858.211