Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1018g00005 ATGGACTTCACAGTGGACTTGAATCCTCTCAGTGATGACAAAAATGAAATAATTGAAGATTACCTTCCAAACATGGAGGAAGAGGGTGATACTGCCGTGTATAGTAGCTACATTGAGGCAGCAGAGAAATCTATTTCTACAAAGACCATAATCACAGAGAAAAACTTCACCGTTTTGGAAGAATCTAACATCAAGCGGCTTCAAGAGGCCGATATCAATCAGATTTCGTATGTTCTTTCGATATCAAAATTTTCTGCTTGCCTTTTGCTCCATCACTGTGAGTGGAGCGTGACTAAAGTGTTTGAAGCATGGATTGATAATGAAGAAAGAGTTCGCAACACTGTAGGGTTGCTTAAACAACCCCAGATTAGGTCAACAGGGTGTGGCCATCCATTTTGCATGATTTGTTGGATGCGTTATGTGGATACAAAGATTGATGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTCTTGTGGTGCAGCTGTGGATGGAGGCATGGTTCATGAACTTGCAAGTGAATCAAGTGAGAAAAGGTACAATCAATTTTTGTTCCGTTCTTATCTTGAAAACAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGGTATGCTGCTTGGAAACAAGTGATTGAATGTAGAGGGATACTAAAATGGTGTTATACATATGGATATTATCTACCTGATAATATAAAGGCCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACTGGGAGAGTATCTAAATGTTGAGCGAAAAGATGACTTTAATGATTTTTGTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGAATTATTTTGACAAGTTGGTGAAAGCATTAGAGGATGGCCTTGTTGATGTGCATGTGAATAATGACACAAGTATGAAAAGAAAATCAAGTGAGATAGGCAAGACTTCTTATCGAAGGGGAACCAAGAGAATAATTACCATTGATGGACTGGCCAAAAATGATCTTTGGCAATGTGAGGCATGTGGTCATTACAATTCTGCCTCTTCTCTTGTGTGTCAGGATACTAATTGCAGACAACGCTTTGATTAG 1122 0.393 MDFTVDLNPLSDDKNEIIEDYLPNMEEEGDTAVYSSYIEAAEKSISTKTIITEKNFTVLEESNIKRLQEADINQISYVLSISKFSACLLLHHCEWSVTKVFEAWIDNEERVRNTVGLLKQPQIRSTGCGHPFCMICWMRYVDTKIDEGPYKCLTLRCPEPSCGAAVDGGMVHELASESSEKRYNQFLFRSYLENNKKIKWCPAPACGYAAWKQVIECRGILKWCYTYGYYLPDNIKAKKDFFEYIQHKAEVTFEKLDQCVGMELGEYLNVERKDDFNDFCLKLVNLTNVTKNYFDKLVKALEDGLVDVHVNNDTSMKRKSSEIGKTSYRRGTKRIITIDGLAKNDLWQCEACGHYNSASSLVCQDTNCRQRFD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1018g00005 373 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 237 IPR031127 GO:0004842|GO:0016567
Sebi1018g00005 373 Gene3D - 120 308 - -
Sebi1018g00005 373 Pfam IBR domain, a half RING-finger domain 181 212 IPR002867 GO:0008270
Sebi1018g00005 373 FunFam RBR-type E3 ubiquitin transferase 115 195 - -
Sebi1018g00005 373 SUPERFAMILY RING/U-box 123 193 - -
Sebi1018g00005 373 ProSiteProfiles TRIAD supradomain profile. 99 209 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1018g00005 Sebi-Chr1018 144323 146032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1018g00005 210 364 ARIADNE family AT1G65430 42.308 1.36e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1018g00005 K11968 - gmx:100801350 210.69