Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1010g00016 ATGGACATGTTTAAGCAGAGGAAGAAAACCACAGGGCGCAAGAAGATTGAGATCAAGAAACTTGACAAAGATTCCAACAAGCAAGTCACCTTCTCAAAAAGACGAGCAGGATTATTCAAGAAAGCCAGTGAACTTTGTATTTTATGCAATGTTCATGCAGCCATAATTGTGTTTTCTCCTGCTGACAAACTGTTCTGCTTTGGCCAACCCAATCCTGAAACCATCCTCACCCGCTATCTCAATGGAAATGCAGATTTTGAGCCAACAAAGTCCACAGGAAAATCAGTCTCCTATGAAGAGCACAATAGGCAATATGAGGAGGCAATAAAAACATTGGAGACTGAAAAAAAGAATCTATCAGAAATTGAAAGTTTGGCTAAAGTTTGGGATAGAGGGAACTGGTGGAATGAGCCAATTGATGAGATGGGTATAGATCAGCTTGAGCAATTTATGATATCTATCAATGAGTTAAGGAGGAAGCTGGCTGGAAGAGCAGATGAACTATCAATGATGCTTGCCATGCTATAG 528 0.4034 MDMFKQRKKTTGRKKIEIKKLDKDSNKQVTFSKRRAGLFKKASELCILCNVHAAIIVFSPADKLFCFGQPNPETILTRYLNGNADFEPTKSTGKSVSYEEHNRQYEEAIKTLETEKKNLSEIESLAKVWDRGNWWNEPIDEMGIDQLEQFMISINELRRKLAGRADELSMMLAML 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1010g00016 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Sebi1010g00016 175 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Sebi1010g00016 175 Coils Coil 95 125 - -
Sebi1010g00016 175 Gene3D - 23 125 IPR036879 GO:0003677|GO:0046983
Sebi1010g00016 175 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Sebi1010g00016 175 PANTHER MADS BOX PROTEIN 13 161 - -
Sebi1010g00016 175 FunFam Agamous-like MADS-box protein AGL62 23 88 - -
Sebi1010g00016 175 CDD MADS_MEF2_like 12 85 IPR033896 GO:0000977|GO:0045944
Sebi1010g00016 175 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Sebi1010g00016 175 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Sebi1010g00016 175 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Sebi1010g00016 175 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1010g00016 Sebi-Chr1010 164355 164882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1010g00016 8 168 Type I MADS-box Gene Family AT5G60440 40.237 1.48e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi1010g00016 SRF-TF 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1010g00016 - - cam:101502875 262.692