Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1010g00011 ATGGCTGCTGTTTCCTTTCTTTGCTGTGTATTTGTAATAATCGTATCGCAAGCCAGCGCCCAGGATCCAGTATCCTGTGATAACGATAGAGGCAACTATACAGCCAATAGCACCTATGACAACAACCTCCACACCCTTTTATCCAGCTTCTCTTCCCACACAGAAATTAACTATGGTTTCTACAATTTCTCATATGGCCAAAACACAGATAAAGTATACGCCATTGGGTTGTGTAAAGGAGATCTTAAGCCAGATGAGTGCCGTGGATTACTAAACGACTCCGCCGTTTATCTCAGAAAGCAGTGTCCATACCAGAAAGAGGCAATTGTGTGGACTGGCAATTGCACGTTGTGGTACTCCAACCGCTCTATATTTGACGTCTTGGAAATTCATTCACCTACAATTTACTTAATCTACGAAAGGCCTGTAAATGAGGTGGATCAGTTCAATGAAGTGCTCAAAGACTTGATGAGAAATCTGAAAAACAGAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCCACAGATAATGTCACTGATGCAAATTTTCAAACAATATACGGTCTTGTGCAGTGCATGGCTGATTTGTCAGGACAAGAATGCAATGATTGCTTGGATCAAGCTATCTCTGAAATTCAAACTTGTTGTAAGGGCAAGATGGGAGGAAATATTCTTAAACCCAGTTGTCGTCTTAGATTTGATCCCTACCGCTTCTACGGACCTACCACCATATTAGACCAAGAGGCGGCACCACCGCCTTCAATACCTTCTGCACCAGCCACCACTTCACAAGGAAAGAGCAACAAAACACGAACTGTCGTCATCGTCGCCGTAGCAGTGCCGGTTGTCACTGTCGTTTTGGTGTTTAGTTTTATTTGCATCTATTCAAGAATGATAAAGTCAAGAAAATTTTTTGCAATTGAAAAGGGAAAAGATGATAGTGAAGATGAAATTACAATTGCTGAGTCATTGCAATTCAACTTTGACACCATACGAGTTGCTACAAGTGACTTCTCTGATTCTAACAAACTTGGACAAGGTGGATTTGGAGCAGTTTATTGGGGCAAGCTCTCTAATGGACAGGTTATTGCTGTCAAAAGATTATCAAGGAATTCTAACCAAGGAGATGTGGAATTTAAGAACGAAGTGCTTTTAGTGGCCAAGCTTCAACACCGAAATTTAGTTAGGCTACTTGGTTTCAGTCTAGAAAGGAGAGAAAGGCTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGAACCCACAAGGAAAACACAATTGAATTGGGAAATGCGCTACAAAATCATTAGAGGCATTGCTCGAGGCCTTCTTTACCTTCACGAGGATTCTCGATTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGATGAAGAGATGAATCCTAAGATATCAGATTTTGGTATGGCAAGATTGTTTGTTGTGGATCAAACTCAAGGAAATACAAATAGAATTGTTGGAACCTAG 1512 0.4061 MAAVSFLCCVFVIIVSQASAQDPVSCDNDRGNYTANSTYDNNLHTLLSSFSSHTEINYGFYNFSYGQNTDKVYAIGLCKGDLKPDECRGLLNDSAVYLRKQCPYQKEAIVWTGNCTLWYSNRSIFDVLEIHSPTIYLIYERPVNEVDQFNEVLKDLMRNLKNRAASGDSRRKYATDNVTDANFQTIYGLVQCMADLSGQECNDCLDQAISEIQTCCKGKMGGNILKPSCRLRFDPYRFYGPTTILDQEAAPPPSIPSAPATTSQGKSNKTRTVVIVAVAVPVVTVVLVFSFICIYSRMIKSRKFFAIEKGKDDSEDEITIAESLQFNFDTIRVATSDFSDSNKLGQGGFGAVYWGKLSNGQVIAVKRLSRNSNQGDVEFKNEVLLVAKLQHRNLVRLLGFSLERRERLLVYEFVPNKSLDYFIFEPTRKTQLNWEMRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFVVDQTQGNTNRIVGT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1010g00011 503 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 19 124 - -
Sebi1010g00011 503 SMART serkin_6 338 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00011 503 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
Sebi1010g00011 503 Gene3D Transferase(Phosphotransferase) domain 1 414 503 - -
Sebi1010g00011 503 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 414 503 - -
Sebi1010g00011 503 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 503 - -
Sebi1010g00011 503 SUPERFAMILY Protein kinase-like (PK-like) 317 503 IPR011009 -
Sebi1010g00011 503 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Sebi1010g00011 503 Gene3D - 135 238 IPR038408 -
Sebi1010g00011 503 Gene3D - 23 123 IPR038408 -
Sebi1010g00011 503 ProSiteProfiles Gnk2-homologous domain profile. 131 238 IPR002902 -
Sebi1010g00011 503 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Sebi1010g00011 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Sebi1010g00011 503 ProSiteProfiles Protein kinase domain profile. 338 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00011 503 FunFam Cysteine-rich receptor-like protein kinase 10 133 238 - -
Sebi1010g00011 503 Pfam Protein kinase domain 339 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00011 503 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Sebi1010g00011 503 Pfam Salt stress response/antifungal 146 234 IPR002902 -
Sebi1010g00011 503 Pfam Salt stress response/antifungal 26 121 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1010g00011 Sebi-Chr1010 126896 129482 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1010g00011 26 503 Receptor kinase-like Gene Family AT4G38830 50.104 4.74e-152 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1010g00011 Pkinase 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1010g00011 - - gmx:113000777 658.292