Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1010g00009 ATGATTCCTTCACTTGAGCTGCTTTCCTTCCTTCCTCTCATCCTCTTTCTCATACTCAAATCTGAAGCCAACGACCAGCTAAGTTTCCTGTACCACGATTGTAACGAAATCCACGGAAATATTACCCGGGGCAGTAACTACGGAAACAACCGGGATGCAGTTTTTCAAAAGATCTATACTGATACAGAAATTGATTACGGCTTCTACAACTTCTCCTACGGCAAAGACTCTGACAAAGTTAACGCAATAGGGCTCTGTAGAGGAGATGTTAAACCAGATGTCTGCCGTAGTTGCCTGTACAAATCCGCGGTCCTTCTCTCAGAGCGGTGCTCAGCACAGAAAGAGGCAATTGGATACTATGACAATTGCACGTTACGCTATTCCAACGACTCAATATTTGGTATCATGGAAACTAAAACTTCCCAAGTTTACTGCCACCTAAATGCCTCCGCAGAAGTCGATGATCGCTTCAATCAAACCCTCCACAGCTTGCTAGATAGACTGAAAACCACCGCGGCAGACGGTGACTCCCGTCTGAAATTTGCTGAAGATAGTGCTCCAGTTCAATCAAGCAATTATAACAGTACTATATACGCTCTCCTTCAGTGCACGCCTGATTTGTCTAAGGAAGAATGTGCTCGGTGCTTGGAATCGTCTTTTGTGAACAACATGTTTTCAATACCCTGTGATGTAGAGGGAGGCATTCGGTACATAGGACCAAGTTGTTCGGTGAGATATGAGACCCACGCCTTTTTTGACCCCATACTCATTGATGCACCAGCCCCACAGCCTTCGCAAGCACTTTATCCACCCCCATCTCCCACCACCACATCTAGCCAAGGAAAGAGCAAGACATTTCGGACGGTCATTGCAGTAGTTATTCCAGTCGTTGCGGTTGCTGTATTCCTCATCGTTTTCCGCATTTATGTAGGAGCGAGAAAATCGAGGCACGACTATATGGATGGACAGGATGATCCAATCAAGCGTGCAATTTTGGATTGGGAAGTACGCTCCAAAATTATAAGAGGCATTGCACGTGGTCTTCTTTATCTTCATGAAGATTCTCGACTACAAATTATTCACCGAGATTTAAAAACAAGTAACATTCTGTTAGATGCAGAGTTGAGCCCAAAAATATCAGATTTTGGCATGGCAAGATTGTTTGATGTCAATCAAACTCAAGGCAATACAATGACGATTGTAGGGACTTTTGGATATATGGCTCCTGAGTACATTAAACATGGACAATTCTCAATAAAGTCAGATGTGTTTAGTTTTGGCGTAATGATTCTAGAAATTGTGTGTGGCCGAAGAAACAGTAGTGAGATTCGTAACGGGGACAATGTAGAGGATCTACTAAGCTTTGCATGGAAAAATTGGAGTGCGGGGACGACTTTGAATATAGTAGATCCCATATTAAAAGATGGTTCTGAGAATGAGATAATGAGATGCATCCACATTGGATTGCTCTGTGTTCAAGAAGATTTGGCTGATAGACCAACAATGTCTTCAGTTTTGCTAATGCTTAACAGCAGCTCTTACCCACTCACTCAACCTTCAGAACCTCCATTTTTAATGCAACGTAAAAGATTATTATATGTGCCGTCAACATCGTCAAGCGAGCAATATTCAGAGGCCACAAGGTCAAGTGATTCAGGAAGTCAATCTGCTCTAGGATCAACAAATAAGTCTTCAATTACGGATCTATCTGCTCGCTAG 1719 0.4287 MIPSLELLSFLPLILFLILKSEANDQLSFLYHDCNEIHGNITRGSNYGNNRDAVFQKIYTDTEIDYGFYNFSYGKDSDKVNAIGLCRGDVKPDVCRSCLYKSAVLLSERCSAQKEAIGYYDNCTLRYSNDSIFGIMETKTSQVYCHLNASAEVDDRFNQTLHSLLDRLKTTAADGDSRLKFAEDSAPVQSSNYNSTIYALLQCTPDLSKEECARCLESSFVNNMFSIPCDVEGGIRYIGPSCSVRYETHAFFDPILIDAPAPQPSQALYPPPSPTTTSSQGKSKTFRTVIAVVIPVVAVAVFLIVFRIYVGARKSRHDYMDGQDDPIKRAILDWEVRSKIIRGIARGLLYLHEDSRLQIIHRDLKTSNILLDAELSPKISDFGMARLFDVNQTQGNTMTIVGTFGYMAPEYIKHGQFSIKSDVFSFGVMILEIVCGRRNSSEIRNGDNVEDLLSFAWKNWSAGTTLNIVDPILKDGSENEIMRCIHIGLLCVQEDLADRPTMSSVLLMLNSSSYPLTQPSEPPFLMQRKRLLYVPSTSSSEQYSEATRSSDSGSQSALGSTNKSSITDLSAR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1010g00009 572 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Sebi1010g00009 572 SUPERFAMILY Protein kinase-like (PK-like) 327 547 IPR011009 -
Sebi1010g00009 572 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 328 572 - -
Sebi1010g00009 572 ProSiteProfiles Gnk2-homologous domain profile. 139 251 IPR002902 -
Sebi1010g00009 572 Gene3D - 138 251 IPR038408 -
Sebi1010g00009 572 Gene3D - 26 131 IPR038408 -
Sebi1010g00009 572 Pfam Protein kinase domain 330 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00009 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Sebi1010g00009 572 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Sebi1010g00009 572 FunFam cysteine-rich receptor-like protein kinase 10 319 516 - -
Sebi1010g00009 572 SMART serkin_6 301 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00009 572 MobiDBLite consensus disorder prediction 536 572 - -
Sebi1010g00009 572 ProSiteProfiles Protein kinase domain profile. 165 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00009 572 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Sebi1010g00009 572 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Sebi1010g00009 572 Gene3D Transferase(Phosphotransferase) domain 1 315 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1010g00009 Sebi-Chr1010 93902 99613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1010g00009 29 572 Receptor kinase-like Gene Family AT4G23280 34.634 6.81e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1010g00009 Pkinase 9.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1010g00009 - - vvo:131627279 428.328