Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1010g00004 ATGCTTCCCATAACTCTTCTGCTTCTCTGCTTCCCAATAGAACTCTTGATTAGCAGAACCCAGGCAGAGCCTACTTACAGTTATCACTTCTGTCTAAACACAACCACTTTTGCCCCAAACAGCATCTACCAAACCAATCTCAAAACTTTACTCTCTACTCTTTCTTCAAACTCCAATCAAAGTGATGGGTTCTACAACACCACCACTGGTCAAAACAACCCAAACAACACGCTCTATGGTCTCTTCCTCTGTCGGGGAGACGTCACCACTCAGACATGCCAGGACTGTGTCTCAACAGCAACCAAACAAGTCCTTCAGAGATGTCCCAACGAGAAAGAGGCTTTCATTTGGTACGATGAATGCTTGCTACAGTATTCTGATGAGTCTTTCTTTTCCACGGTGCAAGAAAGACCACTAATTCCCTTGTCCAACAGTGCCAATGCCTCGGACCAGAGTAGCTTCATGCAGTTGGTGGGTGTTACCTTGCGTGCAGTAGCTGATGAAGCAGAAAACGGTGAGAATGGCAAGAAGTTTGCCACCAAAGAAGCCAATTTCACTGGTTCTACAATTTTGTACACACTTGGACAGTGCACTCCAGATTTGTCAACACCAGATTGCAATAAGTGTCTGCAGATAGCGATTGCAAACCTACCCAATTGCTGCAATGGGAAACTGGGTGGAAGAGTGCTCACTCCTAGTTGTTATGTTAGGTATGAAGTGTACCCTTTCTACCGAAGCGTGGCTTTGGCACCAGTGCCTAGGCCAGACTTACCTCAGGAAGGAAGAAGCAAGACCTCCACTGGGACAATCATTGCCATAATTGTCACTACTGTTTTATTTATAGTGGTTGTCTTTCTCTGCTGCTGGTACCTAACAAGAGGAGCAAGGAAGAAGTATACTTCTTTTCCGGAACAAAATGTTGAAATTTCAACTGCAGAATCGCTGCAATTTGATTTAGATACAATAAAATCTGCCACAGACAACTTTTCCCGTGTCAATAAATTAGGTCAAGGAGGATTTGGGGAGGTATACAAGGGCACACTTCCTAGTGGACTTGATATAGCTGTGAAGAGGCTATCACGCAGCTCTAGACAAGGTGTTGAACAGTTCAAGAATGAGGTTGTTACAATGGCACAGCTTCAACATAGAAACCTTGTAAGGCTGCTGGGATTTTGCTTGGATGAAGAAGAAAAAATACTCATCTATGAATATGTTCCCAACAAAAGCTTGAACCATTTTCTGTTTGATCCTCAATTAGGAAATACACTGGATTGGTCAAAACGTTACATGATAATTGGTGGAATTGCACGAGGAATCCTATATCTTCATGAAGATTCACGGCTCAGAATTATACACCGTGATCTTAAAGCTAGTAATATATTGCTGGATGAAGAATTAAATCCTAAAATTTCGGATTTTGGTACAGCCAAGATTTTTGGAGGTGACCTAACTCAAGCAAACACAAATAGAATTGTTGGAACCTTTGGCTACATGTCTCCGGAATACGCAATGCATGGGCAATTTTCAGTTAAATCTGATGTGTACAGTTTTGGTGTTATGGTTCTAGAAATTATCAGTGGCAGGAAGAATAAATCTGACCTGTTGAGCTATGCCTGGAAGCTGTGGAGGGAAGGGGCGCAATTGGAATTGTTGGATCCTGCTCTAAAGGATTCTTATTCAAGAGAGGAAGTTATCAGGACCCTTCTGTCTTCCTTATCGTCCAACGTCACCGGAAACACTGCATTCTACAACACCACCGTATCCGGCGGAAGCTCCTCCGACACCGTCTATGGCCTCTTCATGTGCAGGGGTGACGTGCCCCGTGAACTATGTCAAAAATGCGTGGCAAACGCAACCCAAAGACTACATGGTCAAGGTTCAGATACGTGCCCCTTTGCGAAAGGTGCTATAATTTGGTATGATGAGTGCATGGTTCGCTATTCCAATAGGTACTTCTTCTCCACTGTGGACACAAGGCCTAGAATGCGCCTTCGGAACACTGCCAATGTCTCTGACCCAGAAAGCTTCGTACGTTTGTTGTACACTACTTTGAACGAAAGTGCAGATGAGGCAGCAAATTCTTCTAATGGTGCCAGATTTGCAACAAAGGAAGCTAAGATATCTGGGTTCCAAACTCTGTATTGTTTAACTCAGTGTACACCGGATTTGTCGCCCCAAGATTGTAGAAGGTGTCTCAGTGGTGTGATTGGGGACCTTGCATGGTGTTGTCATGGAAATCAAGGAGGAAGAGTTCTGTATCCCAGTTGTAACTTTAGGTATGAATTGTACCCTTTCTATAGAATGGCATCCCCAACACCTGAAGGACTTGTTAGTCCTACAAATTCTGCAATACAAAAAGGAAAAAAAGGCATCTTATCAGAGACAGCCACTGCAACTTTTATTTCAGTTACTGTTGCTGTGCTATCATGGGCATTTGTTTCTTAA 2445 0.4339 MLPITLLLLCFPIELLISRTQAEPTYSYHFCLNTTTFAPNSIYQTNLKTLLSTLSSNSNQSDGFYNTTTGQNNPNNTLYGLFLCRGDVTTQTCQDCVSTATKQVLQRCPNEKEAFIWYDECLLQYSDESFFSTVQERPLIPLSNSANASDQSSFMQLVGVTLRAVADEAENGENGKKFATKEANFTGSTILYTLGQCTPDLSTPDCNKCLQIAIANLPNCCNGKLGGRVLTPSCYVRYEVYPFYRSVALAPVPRPDLPQEGRSKTSTGTIIAIIVTTVLFIVVVFLCCWYLTRGARKKYTSFPEQNVEISTAESLQFDLDTIKSATDNFSRVNKLGQGGFGEVYKGTLPSGLDIAVKRLSRSSRQGVEQFKNEVVTMAQLQHRNLVRLLGFCLDEEEKILIYEYVPNKSLNHFLFDPQLGNTLDWSKRYMIIGGIARGILYLHEDSRLRIIHRDLKASNILLDEELNPKISDFGTAKIFGGDLTQANTNRIVGTFGYMSPEYAMHGQFSVKSDVYSFGVMVLEIISGRKNKSDLLSYAWKLWREGAQLELLDPALKDSYSREEVIRTLLSSLSSNVTGNTAFYNTTVSGGSSSDTVYGLFMCRGDVPRELCQKCVANATQRLHGQGSDTCPFAKGAIIWYDECMVRYSNRYFFSTVDTRPRMRLRNTANVSDPESFVRLLYTTLNESADEAANSSNGARFATKEAKISGFQTLYCLTQCTPDLSPQDCRRCLSGVIGDLAWCCHGNQGGRVLYPSCNFRYELYPFYRMASPTPEGLVSPTNSAIQKGKKGILSETATATFISVTVAVLSWAFVS 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1010g00004 814 FunFam Cysteine-rich receptor-like protein kinase 25 138 243 - -
Sebi1010g00004 814 SUPERFAMILY Protein kinase-like (PK-like) 308 574 IPR011009 -
Sebi1010g00004 814 ProSiteProfiles Protein kinase domain profile. 329 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00004 814 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Sebi1010g00004 814 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Sebi1010g00004 814 FunFam Lectin-domain containing receptor kinase A4.3 405 580 - -
Sebi1010g00004 814 FunFam Cysteine-rich receptor-like protein kinase 10 293 404 - -
Sebi1010g00004 814 Gene3D Transferase(Phosphotransferase) domain 1 406 558 - -
Sebi1010g00004 814 Pfam Protein tyrosine and serine/threonine kinase 332 532 IPR001245 GO:0004672|GO:0006468
Sebi1010g00004 814 FunFam Cysteine-rich receptor-like protein kinase 25 660 765 - -
Sebi1010g00004 814 Pfam Salt stress response/antifungal 31 127 IPR002902 -
Sebi1010g00004 814 Pfam Salt stress response/antifungal 670 763 IPR002902 -
Sebi1010g00004 814 Pfam Salt stress response/antifungal 563 649 IPR002902 -
Sebi1010g00004 814 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Sebi1010g00004 814 SMART serkin_6 329 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1010g00004 814 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 10 253 - -
Sebi1010g00004 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Sebi1010g00004 814 Gene3D - 660 765 IPR038408 -
Sebi1010g00004 814 Gene3D - 139 243 IPR038408 -
Sebi1010g00004 814 Gene3D - 23 130 IPR038408 -
Sebi1010g00004 814 Gene3D - 559 652 IPR038408 -
Sebi1010g00004 814 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 130 - -
Sebi1010g00004 814 ProSiteProfiles Gnk2-homologous domain profile. 25 130 IPR002902 -
Sebi1010g00004 814 Gene3D Phosphorylase Kinase; domain 1 291 404 - -
Sebi1010g00004 814 CDD STKc_IRAK 335 569 - -
Sebi1010g00004 814 ProSiteProfiles Gnk2-homologous domain profile. 543 652 IPR002902 -
Sebi1010g00004 814 ProSiteProfiles Gnk2-homologous domain profile. 658 765 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1010g00004 Sebi-Chr1010 55087 60530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1010g00004 565 808 Receptor kinase-like Gene Family AT4G05200 43.137 9.70e-49 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi1010g00004 PK_Tyr_Ser-Thr 9.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1010g00004 - - vvi:100257888 661.759