LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi1010g00003	ATGATTGCCAAGACCCAAAAAAGCCTAGTGGTATTCCTACTTAGCATCCTTATCCTCACCGTTACAGAAACCTCTGCATCAGTGTTCAACAACGTCAGCTGCACAACCAACGAGACTTTTACTCCAAACAGCACCTTCCACACCAACCTCAACACCCTTCTCTCTTCTCTTTCCTCCAACGCCACCGGCGATGTCAGATTCTTCAACGCAACCGCAGGAGGAAGCGATTCGGACAGTACAGTCTACGGCCTCTTCATGTGCCGTGGAGATGTTCCAATTGCTCTGTGCAGAGAGTGCATCGGTTTCGCAACCCAAACCATAGCCTCATCGTGTCCATCATCAAAAGAAGCTGTGATCTGGTACAACGAGTGCTTGTTGCGTTACTCCTACAGGTTCATCTTCTCTAAAATGGAAACATGGCCAAGGTACCAGATCAAGATTCCAATGGGGGACCCTGTGCTTTTGCACAGTAATGGCTTCTACACTGCATTAGGATCCATTTTGAATTTCCTCCCAAAAGAAGCAGCTCTGGCTCTTACAGGGAATAGCAAATTCGCCGTTAAGCAAGAAAATGCTTCCGCAAACATAACCCTCTACGGCCTTGCGCAGTGCACGCCGGACTTGTCCGCCGGCGACTGCACACGGTGTGTGACGGTTGCGGCGGCGGAATTTCCTGAGTCCTGTTGCGGAGGTAGCATAGGGGAAAGTGTTCTGTATCCAAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCGGGAACCTCGGCGCCAACAGCGATTAATGGAGATACAAATATTCCGACACATGTGATTGTGATCATTGTTGTCTTGGTTGTCATTTTGGTGATGATTTGTTGCATTGGCTTCTGTTTCTTATGGATAAAAGCGAGGAAGAGACGTAAGGCCAGCCTCAGAGAAAACCTTGGACTTGAAATTACTACCTTGGAGTCCTTGCAATTTGATTTGGCTACAATTGAAATAGCAACGAACAAGTTTTCTAAAGATAGCAGGATAGGTAAAGGGGGGTACGGAGAAGTCTACAAGGGAATTCTCCCTGATGGACAAGAAATAGCTGTGAAGAGACTGTCCAGAAATTCTGGGCAAGGAGTGGAGGAATTCAAAAATGAAGTGTTGTTAATTGCTAAACTTCAACACAGAAATTTGGTGAGGTTAATAGGATTTTGTCTTGAAGACAGAGAGAACATACTTATCTATGAATATGTGCCTAACAAGAGCCTTGATCACTTCCTATTCGATCCCCAAAAGCAAACACAATTAACTTGGCCTGAAAGGTATAATATCGTAAAAGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTCAAGATTATACATCGTGATATCAAACCGAGTAATGTTCTTTTAGATAACAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGCTATAGAGCAAATTCAAGGATCTACAAACAGAGTTGTAGGCACATATGGCTATATGTCTCCTGAATATGCAATGCATGGACATTTCTCTGTGAAGTCTGATGTCTTCAGTTTTGGAGTTATGGTTCTTGAGATTATTAGCGGGAAAAAGAATTCTTATTCTTTTGAATCATGTCGTGTTGATGACCTCTTGAGCAATGCTTGGAATCAATGGAAGGATGAATCGCCATTTGAGTTGGTGGATCCAATTATGGTAGAATCTTATAGCCCAAAAGAAGTTGAGAGGTGTATGCAGATTGGTTTATTGTGTGTTCAAGAAAATCCAGATGACAGACCTACAATGGGAACCGTTGTTTCGTACCTTCATAATCCCTCAGTTGAGATGCCATTTCCTCTGGAACCAGCATTTTTCATGCATGGCAGAACAAGAAGACATGAATCATATTCTTCAGGTCACACCACCAATCATTCTTTATCGTCCTCTGTAAATATGATGTCTACGACTAACTTCTTCCCCCGATAG	1977	0.431	MIAKTQKSLVVFLLSILILTVTETSASVFNNVSCTTNETFTPNSTFHTNLNTLLSSLSSNATGDVRFFNATAGGSDSDSTVYGLFMCRGDVPIALCRECIGFATQTIASSCPSSKEAVIWYNECLLRYSYRFIFSKMETWPRYQIKIPMGDPVLLHSNGFYTALGSILNFLPKEAALALTGNSKFAVKQENASANITLYGLAQCTPDLSAGDCTRCVTVAAAEFPESCCGGSIGESVLYPSCIVRYETYPFYQHSGTSAPTAINGDTNIPTHVIVIIVVLVVILVMICCIGFCFLWIKARKRRKASLRENLGLEITTLESLQFDLATIEIATNKFSKDSRIGKGGYGEVYKGILPDGQEIAVKRLSRNSGQGVEEFKNEVLLIAKLQHRNLVRLIGFCLEDRENILIYEYVPNKSLDHFLFDPQKQTQLTWPERYNIVKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNNMNPKISDFGMARMVAIEQIQGSTNRVVGTYGYMSPEYAMHGHFSVKSDVFSFGVMVLEIISGKKNSYSFESCRVDDLLSNAWNQWKDESPFELVDPIMVESYSPKEVERCMQIGLLCVQENPDDRPTMGTVVSYLHNPSVEMPFPLEPAFFMHGRTRRHESYSSGHTTNHSLSSSVNMMSTTNFFPR	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi1010g00003	658	Pfam	Protein tyrosine and serine/threonine kinase	338	605	IPR001245	GO:0004672\|GO:0006468
	Sebi1010g00003	658	FunFam	cysteine-rich receptor-like protein kinase 10	411	613	-	-
	Sebi1010g00003	658	Gene3D	Phosphorylase Kinase; domain 1	297	410	-	-
	Sebi1010g00003	658	Gene3D	Transferase(Phosphotransferase) domain 1	411	613	-	-
	Sebi1010g00003	658	ProSiteProfiles	Gnk2-homologous domain profile.	28	133	IPR002902	-
	Sebi1010g00003	658	ProSiteProfiles	Protein kinase domain profile.	335	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi1010g00003	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Sebi1010g00003	658	ProSitePatterns	Protein kinases ATP-binding region signature.	341	363	IPR017441	GO:0005524
	Sebi1010g00003	658	Gene3D	-	27	132	IPR038408	-
	Sebi1010g00003	658	Gene3D	-	155	251	IPR038408	-
	Sebi1010g00003	658	CDD	STKc_IRAK	341	606	-	-
	Sebi1010g00003	658	Pfam	Salt stress response/antifungal	34	129	IPR002902	-
	Sebi1010g00003	658	Pfam	Salt stress response/antifungal	159	249	IPR002902	-
	Sebi1010g00003	658	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	27	132	-	-
	Sebi1010g00003	658	SUPERFAMILY	Protein kinase-like (PK-like)	321	642	IPR011009	-
	Sebi1010g00003	658	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	298	410	-	-
	Sebi1010g00003	658	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	26	653	-	-
	Sebi1010g00003	658	ProSiteProfiles	Gnk2-homologous domain profile.	142	251	IPR002902	-
	Sebi1010g00003	658	SMART	serkin_6	335	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi1010g00003	Sebi-Chr1010	44428	47630	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi1010g00003	4	658	Receptor kinase-like Gene Family	AT4G05200	43.824	0.0	565

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Sebi1010g00003		PK_Tyr_Ser-Thr	7.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi1010g00003	-		-	mtr:25485264	1004.59