Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi100g00033 ATGGGATTGATAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTGCACTGGCCTTACAACATTGAAGTACCTTGCCATCTATTGGTAGAAGGAAACAATATAATCTATCTGAGGCAGGCTAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGTCCTGGAACTTGA 195 0.4205 MGLIGQDNAIARHGIHGLHWPYNIEVPCHLLVEGNNIIYLRQAKGVTPFQGIMYDYIRLESPGT 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi100g00033 64 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 62 - -
Sebi100g00033 64 SUPERFAMILY Galactose-binding domain-like 6 60 IPR008979 -
Sebi100g00033 64 Pfam Polysaccharide lyase family 4, domain III 4 59 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi100g00033 Sebi-Chr100 1482623 1482817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi100g00033 2 62 Polysaccharide Lyase AT1G09890 62.295 1.81e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi100g00033 K18195 - gmx:100792575 105.531