Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1009g00002 ATGGCTGATTCACTATCAGTTAATGTTGATTCCACACCTAAGCTTGAATTGTATACTAAACAGGAACATAGAACTCCCCATGAGACTGAACATTCAGACTCTCCATCTAGCATCCAAAAGGCTATTGCTGAGTTCGTGGGTACATACATTCTTATATTTGCTGGTTGTGGAGCTGCTCTTATCAATGAGAAGCTGCCACTTACAATAGTAGGCATAGCCATCGTTTCAGGCCTAGCTTTGACGGTTGCTACATATTCAGTTGGTCATGTTTCTGGTGGCCATTTCAATCCTGCAGTCACAATTGCCCTGGCTGCTGTCCGAAAAATTCAATTGAAACTTGTGCCTACTTATGTGTTGTGCCAGTTGATTGGTGCTACAGTGGCCACTCTCACCCTCAAAGTGTTGTATCATGACAAGGTGGATATTGGAGTAACAGTGACTCAATACTTGAGCTCAACTTCTGATCTTGAAGCATTGGTGTGGGAATTCATACTCACTTTCATACTGATGCTCACTATTTGTGGTGCTGCAACTGATCACAGAGGGTACCCTCATTTGAAGCAGAGCAAAGAACTCACTGGAGTTGCAATCGGCATTTCAGTTCTGATTAGCGTCATAATTGCCGGGCCAATTACTGGAGCTTCCATGAATCCTGCAAGGAGTTTAGGCCCTGCCATTGTATCTGGTGATTACAAAAACATTTGGGTTTTCATCATAGGTCCTACTCTGGGAGCAGTCTCTGCAACTATTCTTTACACATTTTTAAGAGTAGCCAAGCCAACTAAACCTGAACCATGTCACATGTGCAGTCATAATCATTTCACTTTTTGA 831 0.4272 MADSLSVNVDSTPKLELYTKQEHRTPHETEHSDSPSSIQKAIAEFVGTYILIFAGCGAALINEKLPLTIVGIAIVSGLALTVATYSVGHVSGGHFNPAVTIALAAVRKIQLKLVPTYVLCQLIGATVATLTLKVLYHDKVDIGVTVTQYLSSTSDLEALVWEFILTFILMLTICGAATDHRGYPHLKQSKELTGVAIGISVLISVIIAGPITGASMNPARSLGPAIVSGDYKNIWVFIIGPTLGAVSATILYTFLRVAKPTKPEPCHMCSHNHFTF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1009g00002 276 Pfam Major intrinsic protein 34 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 Gene3D Glycerol uptake facilitator protein. 5 265 IPR023271 -
Sebi1009g00002 276 MobiDBLite consensus disorder prediction 16 34 - -
Sebi1009g00002 276 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 PRINTS Major intrinsic protein family signature 235 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 PRINTS Major intrinsic protein family signature 198 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 CDD MIP 39 255 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 PANTHER AQUAPORIN NIP2-1 25 259 IPR034294 -
Sebi1009g00002 276 MobiDBLite consensus disorder prediction 16 36 - -
Sebi1009g00002 276 NCBIfam MIP family channel protein 43 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi1009g00002 276 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Sebi1009g00002 276 SUPERFAMILY Aquaporin-like 35 263 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1009g00002 Sebi-Chr1009 14799 17534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1009g00002 10 262 Major Intrinsic Protein MIP AT5G37820 42.529 2.63e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1009g00002 K09874 - gmx:100798380 426.787