Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1007g00007 ATGGGAAGCAAAGGTGGAATTTTTCGTTATGCAGATGGTGGTGACAAGTTGCTATTACTATTTGGTACTTTGGGTTGCATTGGAGATGGCCTACAAACCCCTCTCACAATGCTTGTTCTTGGCAGTTTGATAGATGATTATGCTGGTGGATCTGAACATTCTGTGTCAAACCATACTATAGACAAGTACGCTCTCAGGCTTCTGGCTGTTGCCACCGGGGTTGCTTTATCTTGTTTCATTGAAGGAGTATGTTGGACAAGAACTGCAGAAAGACAAACTTCTCGCATGAGAACTGAATATCTTAAATCAGTCCTAAGACATGAAGTTGGTTTCTTTGACAAGCAAACTGACTCTTCCACAACCTTCCAAGTAATTTCCACCATAACTTCTGATGCTCAAACCATCCAAGATACCATGGCTGATAAGGTACCTAATTGTTTGGTTCACCTCTCAGCATTTATCTCCAGCTTTATAGTTGCACTCTTCCTTTCTTGGAGACTTGCAATAGCTGCTTTTCCATTTTCAATCATGATGATCATCCCAGCACTCATATTTGGGAAGGTTATGAAAGAGCTGGGAAGTAAAATAAAGGATGAATATGGAGTTGCTGGTAGCATTGCAGAACAAGCAATCTCTTCTATTCGCACTGTTTATTCATATGTAGGTGAGAAGCAAACACTAAACAGGTTCAGCTCTGCTCTTGAAAAAAGTATGGAGCTTGGCATAAAGCAAGGTCAAACAAAAGGAGTTGTTATTGGAAGTATTGGGTTGCTATATGCTACTTGGGCATTCCAAACTTGGGTTGGGAGTGTTCTGGCATCAATATCTACTACCCGGATTTTTGAGATGATTGACAGAAAGCCAACTATAAACTCTAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAGGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACACTTATTCTCCAAGGACTCAATCTAAAAGTGCAGGCAGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGAAAATCTACAATCATCTCTTTGCTTGAAAGATTTTATGATCCTATATGTGGTGAGATATTGCTTGATGGATATGATATAAAGAGACTCCACCTTAAGTGGTTAAGGTCCCTCATGGGACTAGTAAACCAAGAGCCAATTCTATTTGCAACATCCATAAAGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATAGAAGATGTTATAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAACTTGGAGCTCAGTTATCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGAGACCCTAAAATCCTACTACTTGATGAAGCTACTAGTGCTTTGGATTCACAATCTGAAAGACTAGTCCAAAATGCCCTTGACTTAGCTTCTAGAGGTAGGACTACAATCATCATAGCCCATCGCCTTTCTACAATTCGTAAGGCAGATTCAATAGTAGTTCTTCAATCAGGAAGAGTGGTTGAATGTGGTTCCCATGATGAACTACTTCAACTGAACAATGGACAAGGAGGGGCTTACAGCAAAATGCTACAACTACAACAAGCAACAACTCAAAATGAAAATGCACTTCATCAAATAAACAAAAGCCCCCATGTAATGGAAAATCTAAGAAGTCCAAACTCAAGCTGGCATAGTACCCCAACTCATCATGCATTTAGCTCTACACAACCATTTAGCCCCATATATTCAATTAGTTTTACAGGTTCAAGCTTTGATGACTACAACATTGAAAACTCAGAGAAATCTTCCCATTCAAACTTCTCCCAATGGCGTTTACTACAAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGATGTTTAGGTGCCATTGGCTCAGGAATATGTCAACCAATTTATTCTTATTGTTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATAGCTCTCAAATCAAATCACAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTAAATTTCATCTCAGGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCCCTTGTTGCAGAAAGAATTTCTTTGTTAGTTCAAATTTCTGTCACAGCTACACTAGCTTTTGTACTTGGTTTAATTGTTTCATGGAGGGTGGCTATTGTTATGATTGCTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGTATGTCAGGCAAAGCAAGAAGTGCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCTACTATTAACCATAGGACTATAGCTGCATTCTCATCTGAGAAAAGGATGCTAAATTTGTTCAAAACTGCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAGTGTCACAATTTATAACAACAGCATCTATAACTTTGACATTTTGGTATGGTGGCAGGTTATTGAATCAAGGGTTAGTGGAATCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAAGCAAATTGCAGATACAGGAAGCATGACATCTGACATAGCTAAAAGTGGAAGAGCTATGAAATCAGTATTTGCAATACTGGATAGGAAAAGTGAGATTGAACCTGAAGATCCTACACATAAAATCAAAATGTTCAAAAAGACTATGAAGGGCCATATAAAACTAAAAGACATCTTTTTTTCATACCCTGCAAGGCCAGATCAAATGATTCTCAAGGGCCTTAGTCTTGATATTGAAGCTGGTAAAACAGTGGCATTAGTGGGACAGAGTGGCTCAGGAAAATCCACTATCATTGGCTTAATTGAAAGATTCTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGATATCAAGGAATTCAATTTGAGAAGTTTGAGATCACATATTGCCCTTGTGAGTCAGGAGCCAACCCTCTTTGCAGGAACTATACGTGACAACATTGTCTATGGGAAAGAGGATGCATCAGAAGATGAAATAAGAAGGGCAGCACGTCATGCAAATGCTCATCAGTTTATAAGTTCAATGAGAGATGGGTATGATACTTATTGTGGAGAAAGAGGAGTGCAGTTGTCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTAGAGCAATGCTTAAGAACCCATCAATCCTTCTCTTAGATGAGGCAACAAGTGCTCTAGACAGTGTGTCAGAGAATCTAGTGCAGGAGGCACTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCACCGTTTGTCAATAATACAAAGTGCTGACTCCATAGCTGTGATTAAAAATGGGAAGGTGGTGGAACAAGGATCCCACTCTGAGTTATTGAATGTTGGATCAAATGGGGCTTATTACTCCTTAATTAGGCTACAACATGGTCACTCAACTTGA 3627 0.3967 MGSKGGIFRYADGGDKLLLLFGTLGCIGDGLQTPLTMLVLGSLIDDYAGGSEHSVSNHTIDKYALRLLAVATGVALSCFIEGVCWTRTAERQTSRMRTEYLKSVLRHEVGFFDKQTDSSTTFQVISTITSDAQTIQDTMADKVPNCLVHLSAFISSFIVALFLSWRLAIAAFPFSIMMIIPALIFGKVMKELGSKIKDEYGVAGSIAEQAISSIRTVYSYVGEKQTLNRFSSALEKSMELGIKQGQTKGVVIGSIGLLYATWAFQTWVGSVLASISTTRIFEMIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPICGEILLDGYDIKRLHLKWLRSLMGLVNQEPILFATSIKENILFGKEGASIEDVISAAKAANAHDFIIKLPNGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERLVQNALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGAYSKMLQLQQATTQNENALHQINKSPHVMENLRSPNSSWHSTPTHHAFSSTQPFSPIYSISFTGSSFDDYNIENSEKSSHSNFSQWRLLQMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDSSQIKSQIRLYSSIFCCIAVVNFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERISLLVQISVTATLAFVLGLIVSWRVAIVMIAMQPLIIACLYSKSILMKSMSGKARSAQREGSQLAMEATINHRTIAAFSSEKRMLNLFKTAMEGPKKESIKQSWISGSILSVSQFITTASITLTFWYGGRLLNQGLVESKHLLQVFLILMGTGKQIADTGSMTSDIAKSGRAMKSVFAILDRKSEIEPEDPTHKIKMFKKTMKGHIKLKDIFFSYPARPDQMILKGLSLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIKEFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIRRAARHANAHQFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAMLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSIIQSADSIAVIKNGKVVEQGSHSELLNVGSNGAYYSLIRLQHGHST 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1007g00007 1208 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 272 - -
Sebi1007g00007 1208 Gene3D ABC transporter type 1, transmembrane domain 273 935 IPR036640 GO:0005524|GO:0016020
Sebi1007g00007 1208 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 307 543 IPR003439 GO:0005524
Sebi1007g00007 1208 Gene3D - 305 573 IPR027417 -
Sebi1007g00007 1208 Gene3D ABC transporter type 1, transmembrane domain 7 272 IPR036640 GO:0005524|GO:0016020
Sebi1007g00007 1208 FunFam ABC transporter B family member 4 297 556 - -
Sebi1007g00007 1208 Pfam ABC transporter 982 1131 IPR003439 GO:0005524
Sebi1007g00007 1208 Pfam ABC transporter transmembrane region 20 274 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi1007g00007 1208 Pfam ABC transporter transmembrane region 640 906 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi1007g00007 1208 ProSitePatterns ABC transporters family signature. 1103 1117 IPR017871 GO:0005524|GO:0016887
Sebi1007g00007 1208 CDD ABC_MTABC3_MDL1_MDL2 964 1203 - -
Sebi1007g00007 1208 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 274 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi1007g00007 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 958 1203 IPR027417 -
Sebi1007g00007 1208 CDD ABC_6TM_Pgp_ABCB1_D2_like 628 944 - -
Sebi1007g00007 1208 Gene3D - 950 1207 IPR027417 -
Sebi1007g00007 1208 PANTHER ABC TRANSPORTER B FAMILY 613 1202 IPR039421 -
Sebi1007g00007 1208 FunFam ABC transporter B family member 1 618 927 - -
Sebi1007g00007 1208 CDD ABC_MTABC3_MDL1_MDL2 307 548 - -
Sebi1007g00007 1208 FunFam ABC transporter B family member 4 954 1207 - -
Sebi1007g00007 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 548 IPR027417 -
Sebi1007g00007 1208 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 964 1200 IPR003439 GO:0005524
Sebi1007g00007 1208 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 639 926 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi1007g00007 1208 SMART AAA_5 991 1177 IPR003593 GO:0016887
Sebi1007g00007 1208 SMART AAA_5 334 520 IPR003593 GO:0016887
Sebi1007g00007 1208 SUPERFAMILY ABC transporter transmembrane region 7 288 IPR036640 GO:0005524|GO:0016020
Sebi1007g00007 1208 ProSitePatterns ABC transporters family signature. 446 460 IPR017871 GO:0005524|GO:0016887
Sebi1007g00007 1208 SUPERFAMILY ABC transporter transmembrane region 626 946 IPR036640 GO:0005524|GO:0016020
Sebi1007g00007 1208 Pfam ABC transporter 325 474 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1007g00007 Sebi-Chr1007 152853 159438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1007g00007 20 551 Calmodulin-binding Proteins AT2G36910 35.026 4.68e-102 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1007g00007 K05658 - gmx:100804664 2016.51