Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1007g00006 ATGGAAATTGAAAGTCTGCCAAATTGGTTTGGTGAAGAGATGTACAGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTGGGATGAATTTGAAGAAGAAATGACTAACATAGATGAACTTGTAGAAGAAATGACTAAGATAGAAGCTGCGATGAAGCACTACGATGAATTTGTAGAAGAAATGACTGAGATAGAAGCTGCAGTAGTTCCTGGATATCCCCCCTCTTCTTTATACACGGAGATGGTTGACAACCTACATGGTCATGATGGATGCAAAAAGAGTCCTGCGACTGCCAAGGGTTCTGATCAGGAGAGGAAGAAAGTGGTTCGTTGGACAAAAGAGGAGCATGGACGCTTTCTGGTGGGACTTGAGAACTATGGCAGAGGACATTGGAAAAATATAGCTCGCTATTCTGTAAGAACAAAAACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCGGGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGACAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTATGCAAGCAGAAGGGATTAATCACCTCATTGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAATCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAAGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGAGATTGGTATTGGTTTGATTTCCTTCAATGGGTTGTACATAAAACGCTTTCTGGTGGGACTTGAGAACTATGGCAAAGGGCATTGGAAAAATATAGCTCGCTATTCTGTAAGGACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCTGGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGATAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATACAAATTATGAGTCTCTCGTGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTGTGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTTTGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCAGCAAAATGATCAAGGTTTCGGAACCACTTCTAATGACTTCAATAAGGACGCTCTTTTTGGTTTTTGGTGA 1707 0.4107 MEIESLPNWFGEEMYSTECTSEENIVLDVMKHWDEFEEEMTNIDELVEEMTKIEAAMKHYDEFVEEMTEIEAAVVPGYPPSSLYTEMVDNLHGHDGCKKSPATAKGSDQERKKVVRWTKEEHGRFLVGLENYGRGHWKNIARYSVRTKTPTQVASHAQKYFLRQKLSGGKDNKRRSSIHDITTDNLTEPTTNSGQDKPLLFNESLMPIMQAEGINHLIEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLMEVFNPNYESLMTNVQPERINHLNEEPLMEVFNPNYESLMTNVQPEGINHHNVEPLMEVFNPNYDEMFMFPSSDIYSETLKFQEIGIGLISFNGLYIKRFLVGLENYGKGHWKNIARYSVRTKTPTQVASHAQKYFLRQKLSGGKDNKRRSSIHDITTDNLTEPTTNSGQDKPLLFNESLMPIVQPEGINHLNEEPLMEVFNTNYESLVTNVQPEGINHHNVEPLMEVFNPNCESLMTNVQPEGINHHNVEPLMEVFNPNFDEMFMFPSSDIYSETLKFQGQQDLDKCLFHHAYAQQNDQGFGTTSNDFNKDALFGFW 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1007g00006 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 357 390 IPR017930 -
Sebi1007g00006 568 Gene3D - 347 391 - -
Sebi1007g00006 568 Gene3D - 115 166 - -
Sebi1007g00006 568 SMART sant 338 388 IPR001005 -
Sebi1007g00006 568 SMART sant 113 163 IPR001005 -
Sebi1007g00006 568 MobiDBLite consensus disorder prediction 166 197 - -
Sebi1007g00006 568 ProSiteProfiles Myb-like domain profile. 109 161 IPR001005 -
Sebi1007g00006 568 CDD SANT 347 386 IPR001005 -
Sebi1007g00006 568 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 37 243 IPR043363 -
Sebi1007g00006 568 MobiDBLite consensus disorder prediction 392 406 - -
Sebi1007g00006 568 Coils Coil 36 56 - -
Sebi1007g00006 568 MobiDBLite consensus disorder prediction 407 422 - -
Sebi1007g00006 568 ProSiteProfiles SANT domain profile. 116 165 IPR017884 -
Sebi1007g00006 568 SUPERFAMILY Homeodomain-like 348 390 IPR009057 -
Sebi1007g00006 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 165 IPR017930 -
Sebi1007g00006 568 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
Sebi1007g00006 568 MobiDBLite consensus disorder prediction 166 181 - -
Sebi1007g00006 568 SUPERFAMILY Homeodomain-like 111 165 IPR009057 -
Sebi1007g00006 568 MobiDBLite consensus disorder prediction 182 197 - -
Sebi1007g00006 568 CDD SANT 116 161 IPR001005 -
Sebi1007g00006 568 MobiDBLite consensus disorder prediction 392 422 - -
Sebi1007g00006 568 NCBIfam myb-like DNA-binding domain, SHAQKYF class 348 389 IPR006447 GO:0003677
Sebi1007g00006 568 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1007g00006 Sebi-Chr1007 83178 86309 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi1007g00006 Myb_DNA-binding 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1007g00006 - - gmx:100783469 199.519