Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1006g00009 ATGGGTAAAGCACCCTGTTGTGACAAACATGGAGTCAGAAAGGGAGCTTGGACTCCTGAAGAAGATGAAGCCTTAGTTGAGTACATCAAGAAACATGGCCATGGAAGCTGGCGTTCACTCCCCAAACATGCAGGTCTCCAACGATGTGGGAAAAGTTGTCGGCTTCGGTGGATAAACTACCTTCGCCCTGGCATCAAGCGTGGCCCATTTACTAATGAAGAAGAAAGTACTATTATGCAACTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGCCTCCTTCGGTCTGGTCATTCCCTAGGGACAAAACAACCATGTCTCATTCCCGATAAAAGGATTGTCCAATCTGAATCTCCTTCTACACGCCACATGATACAATGGGAAAGTGCCAGACTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCATTGCATAATTCATCCTCATTGCATAACCCACATGATTACTTTCTTCAACTTTGGAATTCTGAGGTTGGACAGTCATTTCGGATGAACAAAGGAAAGGAAGGAGTAGTGTGTCAAAGCCTTGTCTCACAAGCATCATCAGCATCTTCAGATGTGTCATTGCAAGTGAAAAACACTGGAACTAGTAGCCATAAGCCAAAGCTTGAAGATGTCAACAAAATTCAAGAACAAGCAAGTAGCTACAAACCAAAGCTTGAAGATGATACTGGTGGGTCAGAGTCAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTACTAGATACTGATATAGGATTCATGGGACAGACTGACAATTTCCTGAATCTCCTTGATGGTAGATGTGACTAA 897 0.4359 MGKAPCCDKHGVRKGAWTPEEDEALVEYIKKHGHGSWRSLPKHAGLQRCGKSCRLRWINYLRPGIKRGPFTNEEESTIMQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRLLRSGHSLGTKQPCLIPDKRIVQSESPSTRHMIQWESARLEAEARLSMESSLHNSSSLHNPHDYFLQLWNSEVGQSFRMNKGKEGVVCQSLVSQASSASSDVSLQVKNTGTSSHKPKLEDVNKIQEQASSYKPKLEDDTGGSESGNYEFLDTSDSALKHLLDTDIGFMGQTDNFLNLLDGRCD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1006g00009 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi1006g00009 298 CDD SANT 69 112 IPR001005 -
Sebi1006g00009 298 Gene3D - 14 66 - -
Sebi1006g00009 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sebi1006g00009 298 CDD SANT 16 61 IPR001005 -
Sebi1006g00009 298 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sebi1006g00009 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi1006g00009 298 MobiDBLite consensus disorder prediction 214 263 - -
Sebi1006g00009 298 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi1006g00009 298 SMART sant 13 63 IPR001005 -
Sebi1006g00009 298 SMART sant 66 114 IPR001005 -
Sebi1006g00009 298 FunFam MYB transcription factor 69 116 - -
Sebi1006g00009 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sebi1006g00009 298 FunFam MYB-related transcription factor 13 66 - -
Sebi1006g00009 298 Gene3D - 69 116 - -
Sebi1006g00009 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi1006g00009 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1006g00009 Sebi-Chr1006 103280 105172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1006g00009 1 298 MYB Transcription Factor Family AT3G61250 51.307 4.40e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi1006g00009 Myb_DNA-binding 7.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1006g00009 K09422 - gmx:100782075 450.669