Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1006g00003 ATGGATGACCTAATTCACTCTAAGTTGAACCTCAACCCCATTCTCTTCCTCTTCTTGTTTCCTCACACTGAGGCACAGTCACCAATGCAGCCAGCATCTCCTTTTGCCAACCACACCATTTGGGACGTCTCTTCCATAGTCATCATCATTGGAGCCTTCATTGCAACTTTCCTCTTGGTAACCGTCTTCTCAATTTTCCTCAGTCACTGTGGCCACTCACACCCCACCTCTTCTCAGAATCACAGTGGCATCCACCCTCAAATCCTCCAAACCTTCCCCATCCTCTTCTACTCTTCCATCAACAACCACCTCAAACGAGAAGACCCTCTTCAATGCGCCGTGTGTCTCTCCGATTTTAACCACCAAGACACCCTCCGTCTCCTCCCTCAATGCAACCATGTCTTCCACCCTCCTTGCATCGATGCCTGGCTTTCTTCCCATGTCACCTGCCCTGTTTGTCGCGCCATTCTCGACCAACCCCTGCATTCTGTTGCCATTGCTGTTGACGGTGAAGGTTCTACTAGTGAAGGTTGCGGTGAAGGGCGGAGGAACGGTGATGAAGAGGATAAAGGGGTGGTGGAACGTGCGTCAAAATCGAAGCTTTTGAGGTCGAATTCGACGGGTCATTCGGTGGTGGAAGATGTGGAGAGGTATACGCTGAGGTTGCCGGAGGATGTGAAGAAGAGTATTATGGTGAACCATGGGGTGATGTTGCAGCGTTCGGCTAGCTACAACTTTGTTGGGAGCTCTATGAAAGGGTTGTGTTGGAGTGACAGTGATGGGAGTAGCAGAGGTAAGAGGCACAGCATTGGGTTGATGGGGAAAGAAAAGAAATTAGCTTGTTGGTGGTGCTCTGTGATGGATGAAGCAGAGGAGAGGATTAAGGGCTATGGAGTGTTTTCCCCTGAGTTCGGTTTAAAGAGTGGAGGGTATCACTGCTGCACACAGACAGAAGTAACTCAAAAAGCTCCCTGTAAAATGTTGCTGTGA 990 0.496 MDDLIHSKLNLNPILFLFLFPHTEAQSPMQPASPFANHTIWDVSSIVIIIGAFIATFLLVTVFSIFLSHCGHSHPTSSQNHSGIHPQILQTFPILFYSSINNHLKREDPLQCAVCLSDFNHQDTLRLLPQCNHVFHPPCIDAWLSSHVTCPVCRAILDQPLHSVAIAVDGEGSTSEGCGEGRRNGDEEDKGVVERASKSKLLRSNSTGHSVVEDVERYTLRLPEDVKKSIMVNHGVMLQRSASYNFVGSSMKGLCWSDSDGSSRGKRHSIGLMGKEKKLACWWCSVMDEAEERIKGYGVFSPEFGLKSGGYHCCTQTEVTQKAPCKMLL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1006g00003 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 158 IPR013083 -
Sebi1006g00003 329 Pfam Ring finger domain 111 154 IPR001841 -
Sebi1006g00003 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 236 - -
Sebi1006g00003 329 SMART ring_2 112 153 IPR001841 -
Sebi1006g00003 329 MobiDBLite consensus disorder prediction 171 205 - -
Sebi1006g00003 329 MobiDBLite consensus disorder prediction 180 197 - -
Sebi1006g00003 329 CDD RING-H2_EL5-like 111 154 - -
Sebi1006g00003 329 FunFam E3 ubiquitin-protein ligase ATL6 72 160 - -
Sebi1006g00003 329 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Sebi1006g00003 329 SUPERFAMILY RING/U-box 103 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1006g00003 Sebi-Chr1006 16401 17499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1006g00003 13 231 Rapid Response to Elicitors AT3G05200 33.852 6.44e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1006g00003 K10664 - gmx:100809056 191.045