Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1005g00005 ATGGGTTGTTGTGTCTCAACAAGCAGTAGAAGTACTTGTAGCAGCAGGAGCAATGGAGAAGTGGTCTCTCCATCTTGCTTAGAAATTGGATTCTGTGGGCAAAAGAGGACAAGAAGAACATTCTCTGATCATGTTATTTCTTTGCACCATTTACCATCCTTACCCAGCAGAATTTTCACTAATGGAAAGAGCCGGTCTTCGTGCATATTCACGCAGCAAGGCCGCAAGGGTATTAATCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCTGAAGATATGATCTTTTGTGGTGTCTTTGATGGCCATGGTCCACATGGTCATCTTGTTGCACGCAAAGTGAGGGATACATTGCCAGTGAAACTACTTTCATTTTTGCATTCTGGTGAATCGAAGCGAACAGGGTCAGGTAAAGCTTGCTTCAAAGGGAATGTAAAACCTGACAGCGGAGACTCTGAGGATTGCTCTGCTGAGGAGAAATTGAATTCTAAATGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGACAAAGAGCTCAGGTCTCATCCAAATCTGGATTGCTTCTGTAGCGGGAGCACAGCTGTGTCAATAGTGAAGCAGGGTTCAAACTTGTTCATGGGCAATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACACCATGGTGGCAGTTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATTAAGCGTTGCAAGGGTAGGGTATTTGCCCTGCAAGATGAGCCAGAAGTGCCTAGGGTATGGTTGCCTTTTGATGATGCTCCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGATTGCTTACAGACAAAGATCAATTCATTGTTCTTGCCTCAGACGGGGTCTGGGATGTTTTAAGCAATGAGGAAGTGGTTGAGATAGTATCTTCAGCACCAACAAGATCATCAGCAGCTAGGATTCTGGTAGATTCTGCTGCTAGAGAGTGGAAACTTAAATACCCAACTTCAAAGATGGATGACTGTGCTGTAGTTTGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATAATGAGGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCAGGTAATCCAATTGAGTCAGATGATGGACAAAAATCTGAGCCATCTTTGCAAAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACAACTAATGGAGGAGCTCTATCTGTTGATGTTGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTCAGGTTTGGAAGGTGTCACCCGTGTAAACTCACTCGTCCAACTTCCTAGATTTTCTGAGGAAAGACCAAACTCTTGA 1416 0.4364 MGCCVSTSSRSTCSSRSNGEVVSPSCLEIGFCGQKRTRRTFSDHVISLHHLPSLPSRIFTNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDMIFCGVFDGHGPHGHLVARKVRDTLPVKLLSFLHSGESKRTGSGKACFKGNVKPDSGDSEDCSAEEKLNSKWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVSIVKQGSNLFMGNIGDSRAIMGSKDSNDTMVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDNEEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETTNGGALSVDVEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPNS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1005g00005 471 MobiDBLite consensus disorder prediction 377 450 - -
Sebi1005g00005 471 FunFam probable protein phosphatase 2C 52 57 372 - -
Sebi1005g00005 471 CDD PP2Cc 65 369 IPR001932 -
Sebi1005g00005 471 MobiDBLite consensus disorder prediction 380 450 - -
Sebi1005g00005 471 MobiDBLite consensus disorder prediction 1 20 - -
Sebi1005g00005 471 SUPERFAMILY PP2C-like 57 371 IPR036457 -
Sebi1005g00005 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 369 IPR001932 -
Sebi1005g00005 471 SMART PP2C_4 55 367 IPR001932 -
Sebi1005g00005 471 Pfam Protein phosphatase 2C 96 346 IPR001932 -
Sebi1005g00005 471 PANTHER PROTEIN PHOSPHATASE 65 367 IPR015655 GO:0004722|GO:0006470
Sebi1005g00005 471 Gene3D - 58 371 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1005g00005 Sebi-Chr1005 122975 126598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1005g00005 1 471 PP2C-type Phosphatase Gene Family AT1G03590 69.602 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1005g00005 - - gmx:100798340 877.47