Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1001g00007 ATGGCCAGACCACAACAGAGATACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCAGAAATTAGACACCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAAGATGCAGCTAGAGCTTATGATGAAGCAGCAAGGCTAATGTGTGACAAACACAATCACTTCTTCCTGAGGCCTCAGAGAACAACAGTTTCACCTAATGTCATTTCCACAACCAACATTCCCATGAAAAGTGGTGAAACTGATGCAATGATGTTGCCACAGAAGAGACAACAGGTGAAGGAGGAGCAAGAATCAGAGGGGAATTGGGTTTTCAAGAAAGTTAAAGTGGAAAGTTCTCATCAGCAATTCATGCCACTTGAGGAAGATCATATAGAGCAAATGATAGAGGAGCTTCTTCATTATGGTTCTATTGAGCTCTGTTCTGTTATTCCACCACAGGCTCTTTGA 468 0.4274 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCDKHNHFFLRPQRTTVSPNVISTTNIPMKSGETDAMMLPQKRQQVKEEQESEGNWVFKKVKVESSHQQFMPLEEDHIEQMIEELLHYGSIELCSVIPPQAL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1001g00007 155 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 95 - -
Sebi1001g00007 155 FunFam Ethylene-responsive transcription factor 2 6 63 - -
Sebi1001g00007 155 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Sebi1001g00007 155 ProSiteProfiles AP2/ERF domain profile. 7 51 IPR001471 GO:0003700|GO:0006355
Sebi1001g00007 155 Gene3D AP2/ERF domain 6 62 IPR036955 GO:0003700|GO:0006355
Sebi1001g00007 155 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sebi1001g00007 155 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Sebi1001g00007 155 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sebi1001g00007 155 Pfam AP2 domain 7 54 IPR001471 GO:0003700|GO:0006355
Sebi1001g00007 155 SUPERFAMILY DNA-binding domain 7 58 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1001g00007 Sebi-Chr1001 115987 116668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1001g00007 1 155 AP2-EREBP Transcription Factor Family AT5G25190 49.457 3.47e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1001g00007 AP2 8.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1001g00007 - - gmx:100819158 210.69