Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1001g00005 ATGCTGCTTCTTGTTATTCACGAACCCATTTGGGTTCATGTCACTGCAGACCCTCCTGTTTCCTCACCTCAACTCACTCCATTTTCCACCTCCATGTCTACTTTTTCCCCAGGTACTGAGGTGAAGGAGGAGCACCACCAAAGAGATTTACACAAGAAAGTGGTAATAGCTCTTGTTGTAGCAAGCAGTGCACTTGGTCAAGATGCAGAGAAGGGGCTCCCTTTAGCACCATTTTTGAGTAAATTCAATTCCATCAAGTTGGTTGGTATGAAGGGGTCTGTTCCAATAATTGAATATGAACAAATAGAAAAATCCACAAATAATTTTGAGGAAGGTAACATCTTGGGTGAGGGTGGTTTTGGACGTGTTTACAAGGCTCGATTGGATGATAACTTGGATGTTGCCGTCAAGAAACTACGCTGTGAAAGTCAAAATGCTACCAGAGAATTTGAGTCAGATGAATTTGCAGAACGAGGTGGATTTGTTAACATTGATGGCAGCACAAAGTTTATTGTGTATGAGTTGATGCAAAATGGGTCCTTGGAAGCTCAATTACATGGACCATCTCGTGGCTCAGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACTGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCAGTGATCCATAGAGATATGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCAATAACTAATGGGTCCCAAAACAAGAACATTAAGCTTTCAGGAACCTTGGGGTATGTAGCCCCGGAGTATCTTCTGGATGGTAAATTGACGGATAAAAGTGATGTATATGCTTTTGGGGTTGTGCTTTTAGAGCTCCTATTAGGAAGGAAGCCTGTGGAAAAACTTGCACCTGCTCAGTGTCAATCCATTGTCACATGGGCCATGCCGCATCTCACTGATAGGTCCAAGATTCCACACATTGTGGATCCAGTGATTAAGGATACAATGGATCTCAAGCATTTATACCAGGTTGCTGCTGTAGCTGTGTTGTGCGTGCAACCAGAGTCAGGTTATCGCCCGCTGATCACAGATGTTCTTCACTCGCTTGTCCCTCTTGTTCCCGTTGAACTTGGAGGAACACTCAGAGTTTCACGAGTGACACAACATGTCTCTCTTGCTGATCCACCTCAAAATCCCAGTCATTGA 1206 0.4337 MLLLVIHEPIWVHVTADPPVSSPQLTPFSTSMSTFSPGTEVKEEHHQRDLHKKVVIALVVASSALGQDAEKGLPLAPFLSKFNSIKLVGMKGSVPIIEYEQIEKSTNNFEEGNILGEGGFGRVYKARLDDNLDVAVKKLRCESQNATREFESDEFAERGGFVNIDGSTKFIVYELMQNGSLEAQLHGPSRGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITNGSQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPHLTDRSKIPHIVDPVIKDTMDLKHLYQVAAVAVLCVQPESGYRPLITDVLHSLVPLVPVELGGTLRVSRVTQHVSLADPPQNPSH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1001g00005 401 FunFam probable receptor-like protein kinase At1g80640 176 374 - -
Sebi1001g00005 401 PANTHER OS01G0750732 PROTEIN 40 373 - -
Sebi1001g00005 401 ProSiteProfiles Protein kinase domain profile. 109 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1001g00005 401 SMART serkin_6 109 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1001g00005 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Sebi1001g00005 401 Gene3D Transferase(Phosphotransferase) domain 1 176 374 - -
Sebi1001g00005 401 SUPERFAMILY Protein kinase-like (PK-like) 87 369 IPR011009 -
Sebi1001g00005 401 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Sebi1001g00005 401 Gene3D Phosphorylase Kinase; domain 1 83 174 - -
Sebi1001g00005 401 Pfam Protein kinase domain 109 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1001g00005 Sebi-Chr1001 57208 59943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1001g00005 96 399 Receptor kinase-like Gene Family AT3G58690 44.548 4.12e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Sebi1001g00005 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1001g00005 - - gmx:100784795 550.051