Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02698 ATGGCTAGGGTGACAACCCACCGAGCCCACTCAACCATCCGAAGGACAGATGAACCTTACTGGAAGCGTCAAGAAGAGGAGTCATGCAACGTGAGGGTTTGCGTTTGGTGGGATGTAGAGAATTGCGACGTCCCCATCGGTGTTAACGTTTTGAAGGTGGCCCCAGCAATCACGGACGCTGTGAGGGCAAACGAGATTAAGGGCCCAATTCATATAACCGCTTTTGGAAATGTCATGCAGCTCTCCAAGGCCAACCAGGAAGCACTTTCTTACACTGTGCTTCATCTCACCCACATTCCCAACGGTGAAAAGAATAGTGCCGATAGATCTCTTCTAGTTGATCTTATGTATTGGGTTTCTCAAAATCATCCACCTGCACATCTATGTCTGATATCGGGTGATAGAGACTTTGCTGGCATGTTGCACCGGTTAAGAATGAATAATTATGATATCTTGCTTGCGACTCCAGGAAAGGCTCCTGATGCTCTCTGCAGTGCAACAATTATAATGTGGCAGTGGTCATCATTGTTTAAGGGAGAAGATCTTACTGGCAAACATTTCAATCATCCTCCTGATGGTCCGTATGGTTCTTGGTATGGAAACTATAAGGTGCCTATTGAAAATCCCTTCTCATATGTAGAGCAATGCAATATGGTTCCTTATTTCTAG 669 0.4544 MARVTTHRAHSTIRRTDEPYWKRQEEESCNVRVCVWWDVENCDVPIGVNVLKVAPAITDAVRANEIKGPIHITAFGNVMQLSKANQEALSYTVLHLTHIPNGEKNSADRSLLVDLMYWVSQNHPPAHLCLISGDRDFAGMLHRLRMNNYDILLATPGKAPDALCSATIIMWQWSSLFKGEDLTGKHFNHPPDGPYGSWYGNYKVPIENPFSYVEQCNMVPYF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02698 222 Pfam NYN domain 32 167 IPR021139 GO:0004540
Rops9g02698 222 Gene3D - 23 170 - -
Rops9g02698 222 PANTHER LIMKAIN B LKAP 21 188 IPR024768 GO:0005777|GO:0010468
Rops9g02698 222 CDD PIN_limkain_b1_N_like 32 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02698 Rops-Chr9 50747295 50748048 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02698 31 179 C2H2 Transcription Factor Family AT5G61190 41.611 1.00e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02698 - - tpra:123916554 336.65