Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02696 ATGGCTAGGGTGACAACCCACCGAGCCCACTCAACCATCCGAAGGACAGATGAACCTTACTGGAAGCGTCAAGAAGAGGAGTCATGCAACGTGAGGGTTTGCGTTTGGTGGGATGTAGAGAATTGCGACGTCCCCATCGGTGTTAACGTTTTGAAGGTGGCCCCAGCAATCACGGACGCTGTGAGGGCAAACGAGATTAAGGGCCCAATTCATATAACCGCTTTTGGAAATGTCATGCAGCTCTCCAAGGCCAACCAGGAAGCACTTTCTTACACTGTGCTTCATCTCACCCACATTCCCAACGGTGAAAAGAATAGTGCCGATAGATCTCTTCTAGTTGATCTTATGTATTGGGTTTCTCAAAATCATCCACCTGCACATCTATGTCTGATATCGGGTGATAGAGACTTTGCTGGCATGTTGCACCGGTTAAGAATGAATAATTACGATATCTTGCTTGCGACTCCAGGAAAGGCTCCTGATGCTCTGCGAGGCAACAATTATAATGTGGCAGTGGTCATCATTGTTTAA 531 0.4727 MARVTTHRAHSTIRRTDEPYWKRQEEESCNVRVCVWWDVENCDVPIGVNVLKVAPAITDAVRANEIKGPIHITAFGNVMQLSKANQEALSYTVLHLTHIPNGEKNSADRSLLVDLMYWVSQNHPPAHLCLISGDRDFAGMLHRLRMNNYDILLATPGKAPDALRGNNYNVAVVIIV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02696 176 Gene3D - 24 171 - -
Rops9g02696 176 Pfam NYN domain 32 164 IPR021139 GO:0004540
Rops9g02696 176 PANTHER LIMKAIN B LKAP 21 160 IPR024768 GO:0005777|GO:0010468
Rops9g02696 176 CDD PIN_limkain_b1_N_like 32 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02696 Rops-Chr9 50733291 50733906 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02696 25 159 C2H2 Transcription Factor Family AT5G61190 42.222 1.53e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02696 - - mtr:11420708 244.588