Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02634 ATGGAAGGTGGTGTTGATCAAAGTGGTATGCAAAGAAATAGTAGTGCATTTGGTTCATCATCAGGAGCAGTTCCTAGACCCCCTAATCGATTGAATGCTATGCCTATGTCTATGAATCAAATGGGTGTTCTAGAGAACCATAAACCCTCTGGTATACCACCCTCACACCCTAATACTAATCAGTTTATGGCTTCTCAACCCCACTCTGGTTCTCAAAGACTGCGTTCTCCCAATTTGAGTCCAGGGTCATCATCATCTCATTCAAGGTCTTTGTCTCAACCCTCTTTTTTCTCTTTGGATTCCCTGCCTCCATTGAGCCCTTCCCCTTATAGAGAACCCTTGTCTGCCACCTCTTTTTCTGAATCAGTTTCAACAGATATGTCTATGGAGGATAGCTTGAATACCTCTCATGCCCCTTCCCCTAATCGTGGTCACGCGGTTCAGCTTGGTCATTGTCTTCCCCCTCGTAAAGGACACAGGCGATCTAGCAGTGATTCGCCTTTGGGAATCTCAGATTTTATTCAGTCTGTACCTCAGTTGGTTCTCCCCGGGACATCGAGCGATCGCCACAATTCCGCTTCTAGGGCAGAAATTTCTGGTTTTGAGAAGCCGATTCAGTTAGTGTTAAAGGAGCCTTATAAGGATATGAACCGTGTTGATGACTTTGGTGGAGAAGCTATGGATCATGGGAGAAAAAAGGATGATGCTCTGGATGATTTATTCAGTGCATACATGAATTTGGACAACATTGATCATCTGAATTTTTCTGGGATGGAAGATAAGGATTTGGATAGCAGAACTAGTGGTTCCAAGACAGTTGAAAGCAGTGACAATGAAGTTGATAGTCATGCAAGTGGAAAAGTAACTGGTACTCAGGGGGCAAGTTCAAGCTGTTCGGAAGAGAGGAGGGAAGGTGTTAAGAGGAGTTCTAATGGAGATATTGCCCCCAGTGCCCGACACCGGAGAAGCTTTTCCTTGGACAGTTCCATAGGGAATTTTCATATCGAAGATGGATCACCTAAGCTTCCTCCTTTACAAAATCGAGTTGGTCAACACTCACCTAGCAATTCAATGGATGGTAAAACATCTGGAATCAGCATGGACTTTGCAAATGGTGAATTCAGCTCAGAGGAGATAAAGAAAATAATGGAAAGTGATAAACTTGCTGAAATTGCCGTGTCTGATCCTAAGCGTGCAAAGAGGATTTTGGCTAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGGTACATTTCTGAATTGGAGCACAAGGTCCAAACACTTCAGACAGAGACAACCACTTTGTCTACTCAGTTTACCAAATTACAGATGGATAATTCAGAGCTTAAAAATGAGAACAACGAATACAAATTGAGGCTTCAATCCTTGGAACAACAATCCCAACTGAAAGATGCTCTGAATGAGACATTGGATGCTGAGGTAAGGCGTTTAAGACGCACTGTTGCAGAACTTGGTGGAGAGTCCCTTCTCTCAAGTCTCATGGCTCAACAACTCGCTATCAACCAACAAATGTTGCAGTTACAGCATCAGCAGCAGCCTAGCCAGCTTAGACATTTTCAACAGCAAAACAGCCAATCTCAGGAAGAAACACAGAATCAGTCACAGCAGACTCAACGCAGTAATGAATTCCAATCCCAGAGACAGAATGGCAAAACTACGGCATACTGA 1695 0.4389 MEGGVDQSGMQRNSSAFGSSSGAVPRPPNRLNAMPMSMNQMGVLENHKPSGIPPSHPNTNQFMASQPHSGSQRLRSPNLSPGSSSSHSRSLSQPSFFSLDSLPPLSPSPYREPLSATSFSESVSTDMSMEDSLNTSHAPSPNRGHAVQLGHCLPPRKGHRRSSSDSPLGISDFIQSVPQLVLPGTSSDRHNSASRAEISGFEKPIQLVLKEPYKDMNRVDDFGGEAMDHGRKKDDALDDLFSAYMNLDNIDHLNFSGMEDKDLDSRTSGSKTVESSDNEVDSHASGKVTGTQGASSSCSEERREGVKRSSNGDIAPSARHRRSFSLDSSIGNFHIEDGSPKLPPLQNRVGQHSPSNSMDGKTSGISMDFANGEFSSEEIKKIMESDKLAEIAVSDPKRAKRILANRLSAARSKERKMRYISELEHKVQTLQTETTTLSTQFTKLQMDNSELKNENNEYKLRLQSLEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSLMAQQLAINQQMLQLQHQQQPSQLRHFQQQNSQSQEETQNQSQQTQRSNEFQSQRQNGKTTAY* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02634 564 SMART brlzneu 393 457 IPR004827 GO:0003700|GO:0006355
Rops9g02634 564 MobiDBLite consensus disorder prediction 52 102 - -
Rops9g02634 564 MobiDBLite consensus disorder prediction 1 169 - -
Rops9g02634 564 MobiDBLite consensus disorder prediction 282 299 - -
Rops9g02634 564 MobiDBLite consensus disorder prediction 346 363 - -
Rops9g02634 564 MobiDBLite consensus disorder prediction 518 564 - -
Rops9g02634 564 MobiDBLite consensus disorder prediction 259 363 - -
Rops9g02634 564 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 395 458 IPR004827 GO:0003700|GO:0006355
Rops9g02634 564 MobiDBLite consensus disorder prediction 111 142 - -
Rops9g02634 564 MobiDBLite consensus disorder prediction 7 26 - -
Rops9g02634 564 FunFam Transcription factor VIP1 isoform A 395 457 - -
Rops9g02634 564 Coils Coil 413 433 - -
Rops9g02634 564 SUPERFAMILY Leucine zipper domain 397 453 IPR046347 GO:0003700|GO:0006355
Rops9g02634 564 Pfam bZIP transcription factor 397 455 IPR004827 GO:0003700|GO:0006355
Rops9g02634 564 Coils Coil 441 496 - -
Rops9g02634 564 CDD bZIP_plant_RF2 398 470 IPR044759 GO:0003700|GO:0006355
Rops9g02634 564 Gene3D - 394 457 - -
Rops9g02634 564 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 80 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02634 Rops-Chr9 49360230 49363926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02634 10 492 bZIP Transcription Factor Family AT4G38900 44.509 3.87e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops9g02634 bZIP_1 5.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02634 - - gmx:100810841 706.442