Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02631 ATGGATGAAAAGATAGACACTGCAGACAAAAAAGTGCTGGTTGACGTTGTAAAATTGGCTCAAAAAAGAGGGATGAAGGGTAAACTGGGGGACTGGAAAGAATTCTTGAAAAGTCATGATAAAAAGTTTGGGGCATTTTTGAGTGATCCAGCAAAGAGGTCCCATGAGATGTTGGCTGCATTTCTGAAGACATTTTCAAAGGATGATGATTTGAAGTTTTTTGCTAACATCATGCGACATCATTCAAATCAATACACGGTGGAGAAACTGAAAGATAAGTCTCATGATTCCTCTGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCATTATATCCGTTGGATTATTCATTTTCATCAATTGATGAGGGATGGGTAATTATAAACCTTAGAAACAAATCCAAGGCAATGAAGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTCAAAGTCTGTGTGGTAGACCAGAATTTAGAGGTCAAGCTACACGAACTTGTAAAACCCAACAAAGCAATAATAGACTACAGAACAGATATTACCGGTGTCTCTTCTCAAGATCTAGAGACAGTAACTTGCTCCTTAGCTGATATACAGAAATCAATGAAGAAGTTGTTATCAAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGTGTGCTGAAGATAGATCATGTTAGAGTGGTTGACACTTCGTATATCTTCCAATTGGTGGACAGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCGCACAATTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAAGATCAAACATGGTGTTGATCAAGCATTTCCAATTACATTGGTTCAAGAGCCTGTTTCGGAAAGTGAGATGGCAAAGCTGCTTCTTCACAGGATACCGACCGCTGTGAACAATGAAACACTGCATAAAATTGTTTCTGGAGACTTCACCATAGAACTGAAGCCTTCCAGGAAAGGTCAAGGAGAATTATATTCTGCCTTAGCTATCTTTAAGAACCAACAAGAGGCACAGAATGCCTATGAAAATGTCCAAGGCAGCCAATTAAAGGATTCATATGGACGTCCACAGAAACTTGTCACATTTCAGCTAAGTACAGGCATGACTGTCAAACTATTTGTTCGGAAAATGGAAACTGATGAACTTCGTGGCCCGATTCCATCTAAGAGAGCTTTACCAGTGGATGAGGAGGTTGCTGTTTCCAAGAAAGCAAAAACGGATCCTACAATTGAAGAGGATGCTAGTAAGTGTGACACTGCCACCCACTTGAATCAGATTGAAGCACTGAATCAACGATTGAAGGAAAAAGATTTGGAGATTGAATCATTGAAAAAACAGTTGAGAGGCTCCAGCAAGTGTGACTCCGACAACCACTTGAATGAGATTGAAGCACTGAATCAAAGATTGAAGGAAAAAGATTTGGAGATTGCATCATCGAAAGAACAGTTGAGACAAAAAGATTTTGAAAACTCCATGCTGCATAAAATGGTGATTCTTACAAAGTTACGGCAATGTCTTGAAAACCCTTTGGGAGAAACCTAG 1644 0.399 MDEKIDTADKKVLVDVVKLAQKRGMKGKLGDWKEFLKSHDKKFGAFLSDPAKRSHEMLAAFLKTFSKDDDLKFFANIMRHHSNQYTVEKLKDKSHDSSEQRLVQVTLQHPLYPLDYSFSSIDEGWVIINLRNKSKAMKSTAMVAVDCEMVLCEDGTEALVKVCVVDQNLEVKLHELVKPNKAIIDYRTDITGVSSQDLETVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKIDHVRVVDTSYIFQLVDRSIHRRPSLNSLCQAVLGYEVREKGAPHNCLDDACAAMKLVLAKIKHGVDQAFPITLVQEPVSESEMAKLLLHRIPTAVNNETLHKIVSGDFTIELKPSRKGQGELYSALAIFKNQQEAQNAYENVQGSQLKDSYGRPQKLVTFQLSTGMTVKLFVRKMETDELRGPIPSKRALPVDEEVAVSKKAKTDPTIEEDASKCDTATHLNQIEALNQRLKEKDLEIESLKKQLRGSSKCDSDNHLNEIEALNQRLKEKDLEIASSKEQLRQKDFENSMLHKMVILTKLRQCLENPLGET* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02631 547 Gene3D - 137 308 IPR036397 GO:0003676
Rops9g02631 547 Pfam Exonuclease 143 292 IPR013520 -
Rops9g02631 547 CDD REX1_like 143 294 IPR034922 -
Rops9g02631 547 Coils Coil 460 480 - -
Rops9g02631 547 FunFam Small RNA degrading nuclease 3 137 311 - -
Rops9g02631 547 SMART exoiiiendus 141 302 IPR013520 -
Rops9g02631 547 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 311 IPR047021 GO:0004527
Rops9g02631 547 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Rops9g02631 547 Coils Coil 489 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02631 Rops-Chr9 49328488 49334122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02631 118 308 C2H2 Transcription Factor Family AT3G27970 29.358 1.10e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02631 K14570 - gmx:100785565 746.117