LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g02600	ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTAATGCAAAAGGAGCATGATTGTGGTGCTAAGAATGCTGGTGATGCTACGAGGCAGTGGGCTGCTGTCGCAAGCACTATTGCTGCCACAGAGAATAAAGATTGTCTTGACCTTTTTATTCAATTAGACGGACTTTGGTTCATCAATAGATGGTTAAATGATGCTCAAAATTTTGGTGTTGATACAAATGATGGCTTCATTGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTGTATGTAGACAGCAAGAAGTCAATTTCATCTGGAATTTGGGTAACTGTAAATAAACTTCTTGGTCATCACAGCTCTAAGGTTCAGGATAGAGCAAGAGTATTATTTGACAGCTGGAAAGTAGGTGGCAATGGAGATGCTGTATCTCATGATAGGGATATGAACAATGTGAATGATAAGATTGTCAAGGAGGAAGGCCAGCTGTCTTCTGTGAACGAAGCTGGCAACAATGATGATCATGCCTCACAACTTGTTGGAGGTGAGAAGTCTCTATTGAGAAGCTCAGATAGTCAGCTACCAGAAAAGGTTGCTAATGTACAGATACAGAATTCTGACCATGCGTTCCAGTCCTCAGTAAGTTTGGATTGTGAACATATCAAAGAGAGATCAAACCATCTTGCTAGTGTTTTGACTTCTGTTCCAGAAATTGCTCCCATAAGCGAAGGTGAGATGAAATCAGCTGGGACCTGTAACTTACCTGTTCTAAAACAAGGCGGTTTCAAAGGACAACCAGATGATTTACAGTTAAATGACTTATCCAAAAAGGAGGAGCAAGATCAAAATGCTAATGGCCCTCCAGAAAAATTAGGAGCACCAGATAACTCTTTAGCACCCACAAAGCCGGAGGCTGAATCTGTTTCTATTGATGCCAGTGAATCAAAAGCCCTGGAATCTGTGAAACAATCTGCTTTAGAACATAATGTTGAAAACAATGAGGATGGTGATTGTCATAAAACAATTGTATCTGGCAGCATGAGAACACCTGCATCTGATAGAATGAGTGAGATGGATGATGCCAGAGATATAAATTCCAACAATCCACAACTATCCAAAGCTTCAGAAAATGATGATGACTGTTGTTCTAATGCATTGCAGCACTCATCAAGCAGTGGCAGTAAGTTGGAAAAGCCTGAGGTGTTAGAGATGTCTTTGCTTAAAACAGAATATGTTAGAGAAGGCAAGGGCCAAGTTTCTAATCAAGGTGATGATGCCTCAAATGTCTCTGATTCTTTTAAATGGGGAAAAGGTTCCAGAAGCCCCAACATTATTGACAAGAGTTCTGACATGGAACTTGAGTATGGTATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCCCAGGAAGTTGAGAGAGAATATGTCAAAGCAGAAAAGGAAGGAAAGGGCCTAGTTTCTGATCAAGGTGATGATACCTCAAATGGTTCTGATTCTTTTAAACGGGGGAAAGGTCCCAGAAGCCCTAACATTATTGACAATCATTCTGACATTGAACTTGAGTACGGTATTGTTGATGCTTTGGAAGTTGCTCGACAAGTTGCCCAGGAAGTTGAGAGAGAAATCCGCAACTCATCTTCAGAGAAAATATCAGAAGGTGGAATCAGGCGGGCTGACAGCCCAGATTCCATAGGGAAAAAGGATGAACTTGCTCATGTCCTACCTGAGGAGGTATCATCTAGGCAAAGCAACTCTGCTGAGGCATGTTCAGAAGAGGAGGGGCATATGAGTGTTTCAGATGATAATGAAGCTGAGCCAGAATGCATCCCTGACTTGGAGTCCTCGCAGGTGACTGAAGCAGCTCGAGATCCAGGAGGTAATTCAGAGAAAAGCCTCTGTACCTTTGATCTCAATGAAGAAGTTGGTTCTGATGATATGGATGTTTCTGCAAACCCTGTGTCTACCACACCAATACCTGTTGTCTTGGCTTCAAAGCCTGCACAGAGTTCTGGGTTGCCAACAGCCCCTTTGCGGTTTGAGGGGACACTTGGATGGAGAGGATCAGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGAAAAAATTCTGATAGTGAGAAGAATGTTTCTGTTGTTGGGAACTCAGATATTTCCAAGCAGAGGCAGGGTTGCCTTGATATTGATCTGAATGTGGGAGAGGATGAAGAAGGATTGGTAAAACAAATTGGTGAATCTTCAGGCCTTCCTTCTGGGCAATCATCAGTGGAACTTAGTCCTAAAAGATCAAGGAGGTTGGAATTGGATTTAAACAGTGTTGGTGATGATGGTGATACCCAACCTTCAGATCCGAGGATGGAGAGGCAACTCTTTTCTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCTTCTTCGTCGTCAATGCAGCCTTCAGTTCGAAACATTGATTTGAATGACAGACCATTCTTTCAAACTGATTTAGTGGACCAAGGGCATACTAAGTCGTCTCCAAATATAGAAGCATATGGGCTTTCTAAATCAGATGCTCCTGTGATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAACATGTTCCTCAAATTTTGTCTTTGTCAAATGGCAAGGCTATTGAGCCTGCTATGGATCTTACAATGTCAGGAGCAGGTGGCATTTTAGGGATTGGCCCCACAGTACCCTACAACCATTCAACTGTTTTTGGGTATAATGGAACATCAGCACCCCCTTTGTCTTTTTCGTCAGCCATGTATGGATCAGGTGGCACAATTCCCTACATGGTGGACTCAAGAGGAGCTCCAGTTGTGCCTCAAGTTGGGGGGTCTTCCTCAACCGTCCTGTCATCTTACGCTCAGCCTCCATTTATCGTGAGCATGACGGGTACACAACTTGGTTTGAATGGCATCGGACCTTCGCGTCCAAACTTTGATCTTAACTCCGGCTACTTGATTGATGGTGGGAATAGAGATGCATTGGCTGCAAGGCCATTTTTCTTTCCTGCTCAGGGCAGGGCTATGGAGGAGCAAGTAAGGACCCTTCCACAACCCTCGAGTTCTGGGGTTGGTGGGAAAAGAAAAGAACCAGACGGTAGCTGGGAAACCTATCCATTTAGCTACAAACACCAGCAACCTCCATGGAAGCAGCTCTAA	3207	0.4378	MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEHDCGAKNAGDATRQWAAVASTIAATENKDCLDLFIQLDGLWFINRWLNDAQNFGVDTNDGFIEESITAMLRAVEKLYVDSKKSISSGIWVTVNKLLGHHSSKVQDRARVLFDSWKVGGNGDAVSHDRDMNNVNDKIVKEEGQLSSVNEAGNNDDHASQLVGGEKSLLRSSDSQLPEKVANVQIQNSDHAFQSSVSLDCEHIKERSNHLASVLTSVPEIAPISEGEMKSAGTCNLPVLKQGGFKGQPDDLQLNDLSKKEEQDQNANGPPEKLGAPDNSLAPTKPEAESVSIDASESKALESVKQSALEHNVENNEDGDCHKTIVSGSMRTPASDRMSEMDDARDINSNNPQLSKASENDDDCCSNALQHSSSSGSKLEKPEVLEMSLLKTEYVREGKGQVSNQGDDASNVSDSFKWGKGSRSPNIIDKSSDMELEYGIVDALEVARQVAQEVEREYVKAEKEGKGLVSDQGDDTSNGSDSFKRGKGPRSPNIIDNHSDIELEYGIVDALEVARQVAQEVEREIRNSSSEKISEGGIRRADSPDSIGKKDELAHVLPEEVSSRQSNSAEACSEEEGHMSVSDDNEAEPECIPDLESSQVTEAARDPGGNSEKSLCTFDLNEEVGSDDMDVSANPVSTTPIPVVLASKPAQSSGLPTAPLRFEGTLGWRGSAATSAFRPASPRKNSDSEKNVSVVGNSDISKQRQGCLDIDLNVGEDEEGLVKQIGESSGLPSGQSSVELSPKRSRRLELDLNSVGDDGDTQPSDPRMERQLFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPFFQTDLVDQGHTKSSPNIEAYGLSKSDAPVISILGAKVEVGRREHVPQILSLSNGKAIEPAMDLTMSGAGGILGIGPTVPYNHSTVFGYNGTSAPPLSFSSAMYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYAQPPFIVSMTGTQLGLNGIGPSRPNFDLNSGYLIDGGNRDALAARPFFFPAQGRAMEEQVRTLPQPSSSGVGGKRKEPDGSWETYPFSYKHQQPPWKQL*	1069

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g02600	1068	Pfam	TFIIS helical bundle-like domain	101	147	IPR017923	-
	Rops9g02600	1068	Coils	Coil	540	560	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	754	822	-	-
	Rops9g02600	1068	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	17	149	IPR035441	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	702	723	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	325	339	-	-
	Rops9g02600	1068	Coils	Coil	473	493	-	-
	Rops9g02600	1068	PANTHER	TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED	488	1066	-	-
	Rops9g02600	1068	ProSiteProfiles	TFIIS N-terminal domain profile.	73	153	IPR017923	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	288	410	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	552	619	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	552	587	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	707	723	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	374	408	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	491	526	-	-
	Rops9g02600	1068	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	61	147	IPR035441	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	805	822	-	-
	Rops9g02600	1068	MobiDBLite	consensus disorder prediction	1027	1068	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g02600	Rops-Chr9	48719916	48727009	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Rops9g02600		Med26	4.1e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g02600	-		-	lja:Lj5g3v0238160.2	1553.5