Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02597 ATGGAAGAAGTGGAACTAGCTTCTGATCCTCGTTTGGAACAAGGCCTAACATCTAAAATGGACCAACAGAAAAAAGTGGAGAGTGTTTCGTTTTTTGGGTTGTTTGCTGCAGCTGATACAACTGACTATGTCTTAATGTTCCTCGGAAGTGTTGGTGCTTGTGTCCATGGTGCTGCTCTTCCTGTTTTCTTTATTTTGTTTGGCCGTATGATTGATTCTTTAGGACATCTTTCTAAGCACCCACACAAATTGTCTTCACGAATTTCTGAGCATGCTTTGTACTTGGTCTATCTTGGAGTCGTTGTTCTGGTATCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACTGGGGAGAGGCAAACAGCTCGTTTGCGCTTAAAATATTTGCAGTCAGTGCTAAAGAAGGATATTAATTTCTTTGACAATGAAGCAAGGGACGCCAATATCATTTTCCACATCTCGAGTGATGCAATATTGGTACAAGATGCAATTGGTGACAAGACAGGCCATACCATGCGTTACCTTTCTCAATTCATTGTTGGATTTGCCATTGGATTTACATCAGTATGGCAGCTTACTCTTCTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGGGGAGCTTATACGATAATTATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCAGAAGCGGGGAAAGTAGCAGAAGAGGTAATCTCTCAAGTGCGTACTGTTTACTCGTTTGTAGGAGAAGAGAAAGCAGTTGGTTCCTACTCCAAGTCGCTTGATAAAGCACTGAAGCTGGGCAAGAAGAGTGGTTTAGCAAAAGGAGTTGGAGTAGGTTTTACATATGGGCTGTTATTTTGTGCTTGGGCATTGCTTCTTTGGTATGCTAGCATACTTGTGAGGCATCATAAAACAAATGGAGGGAAAGCATTCACTACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCTAAAGGGCGTGCAGCTGCAGCCAATATCATGAACATGATTGCATCCGTTTCAGACACTTCTAAAAGGTTGGATGATGGCACTGTTTTGCCACAAGTGGCAGGGAAATTTGATTTTTGTGAGGTCTGCTTTGCTTACCCCTCAAGATCAAATATGATCTTTGTAAATTTGAGCTTCTCAGTGAGTGCTGGGAAGACTGTAGCAGTTGTTGGTCCTAGTGGTTCCGGAAAAAGCACCATCATTTCTCTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACTTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGAAACATTTTATTTGGAAAAGAAGATGCCAGCATGGATCAAATCATACAAGCTGCCAAGGCTGCAAATGCCCATTCTTTCATTACAGGATTACCTGATGGTTATCATACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGACAAAAGCAAAGAATTGCCATAGCAAGAGCAGTGCTCAGAAACCCAAAAATATTGCTTTTAGATGAGGCCACCAGTGCTCTTGATGCTGAATCAGAACTCATTGTACAGCAGGCATTGGAAAAAATAATGTCGGACCGGACAACAATAATTGTTGCACATAGATTATCCACCATACGTGATGTAGATACAATTGTTGTGTTGAAGAATGGTCAAGTTGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAAAAATGGCGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAACACCTCACAAGCTCTAGCTCAATATCTCGCTCTGGAAGTTCAAGAAATTCTAGTTTTCGAGAACCTTTAGACAACTTGAACCATGAGGAGGAGTTGAAATTGGTTACAACAAGAGAACTACAATCAAGTGGTCAAGGTTTGCCATCAAACACTGCTTCCATTCCATCAATTTTGGATTTACTAAAACTGAATGCTCCAGAGTGGCCCTATGCAATACTTGGGTCAGTAGGTGCAGTGATGGCTGGCATGGAAGCTCCTCTCTTTGCCCTAGGAATCACCCACATTTTGACTGCATTTTACTCTCCTCATGGATCTAAAATCAAGCAAGAAGTTGATTGTGTAGCCCTTATATTTGTTGGAGTAGCTGTTGTAACTATACCTATTTATCTATTGCAACATTACTTTTATACATTGATGGGAGAGCGTCTCACTGCCCGTGTGCGTTTATTAATGTTCTCAGCTATTCTTACCAATGAAGTTGCGTGGTTTGATTTGGATGAGAACAACACTGGCTCACTAACAGCCATGCTAGCTGCGGATGCAACATTAGTGAGAAGTGCTCTTGCTGACAGGCTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTAACAGCATTTGTTATTGCCTTCACATTGAGTTGGAAACTAACATCAGTGGTTGTAGCCTGCCTTCCTCTTCTAATAGGAGCTTCTATCACAGAGCAACTATTTCTCAAGGGATTTGGAGGAGATTACGGCCATGCTTACTCTAAAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGTACTGTCGCTGCTTTTGGTGCAGAAGATCGAATCTCAATCCAATTTTCCTCTGAATTGAACAAGCCTAACAAGCAGGCACTTTTACGAGGCCATATATCAGGTTTTGGCTATGGTGTAACACAGTTGTTTGCTTTCTGCTCCTATGCAATTGGCCTTTGGTATGCATCCATTTTAATCAAGAAGAAAGAATCAAATTTTGGAGACCTCATGAAGTCCTTCATGGTTTTAATAATCACTGCTCTGGCAATAGCAGAAACACTGGCTCTTACCCCGGACATTGTGAAGGGGTCACAAGCACTAGGATCAGTTTTCAGCATTCTCCAAAGGAAAACAGCCATCAACCCCAATGACCCCAACTCCAAGATGGTAACTGATGTCAAAGGAGAGATAATGTTTAAAAATGTAAGCTTCAAGTACCCAATGAGACCTGATATCACCATATTTCAGAACTTAAACCTCAGAGTCTCAGCAGGTAAGAGTCTGGCAGTAGTTGGCCAAAGTGGCTCAGGGAAGAGCACTGTGATTGCTCTTGTGATGAGATTCTATGACCCTACTTCTGGGTCTGTTCTGATAGATGAATGTGACATCAAAACCCTGAACTTGGGATCCTTAAGGCTGGGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTTTCTACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCAAAAGCAGCAAATGCTCATGAATTCATCAGTAGAATGCCAGAAGGGTACAGAACTGAGGTTGGTGAGAGAGGAGTGCAGTTATCTGGAGGACAAAAACAAAGGGTGGCAATAGCTAGAGCTATTCTGAAAGATCCATCCATTCTTTTATTGGATGAAGCAACAAGTGCATTGGACACAATATCAGAAAGGCTGGTCCAAGAGGCTCTTGATAACCTTATGGAAGGCAGAACAACCATTTTGGTAGCTCACAGGCTCTCAACTGTTCGCGATGCAGACAGCATTGCAGTTCTGCAAAATGGGCGGGTAGCTGAAATGGGCAGCCATGAGAAGCTGATGGCCAAAGCCGGAAGCATCTATAAGCAATTGGTTAGTCTACAGCAAGAAAAGCGTGACCAAGAAGACCATTAA 3753 0.4237 MEEVELASDPRLEQGLTSKMDQQKKVESVSFFGLFAAADTTDYVLMFLGSVGACVHGAALPVFFILFGRMIDSLGHLSKHPHKLSSRISEHALYLVYLGVVVLVSAWMGVAFWMQTGERQTARLRLKYLQSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHTMRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVGSYSKSLDKALKLGKKSGLAKGVGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASVSDTSKRLDDGTVLPQVAGKFDFCEVCFAYPSRSNMIFVNLSFSVSAGKTVAVVGPSGSGKSTIISLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDASMDQIIQAAKAANAHSFITGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMSDRTTIIVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSKNGEYVNLVSLQASQHLTSSSSISRSGSSRNSSFREPLDNLNHEEELKLVTTRELQSSGQGLPSNTASIPSILDLLKLNAPEWPYAILGSVGAVMAGMEAPLFALGITHILTAFYSPHGSKIKQEVDCVALIFVGVAVVTIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEVAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTSVVVACLPLLIGASITEQLFLKGFGGDYGHAYSKATSLAREAIANIRTVAAFGAEDRISIQFSSELNKPNKQALLRGHISGFGYGVTQLFAFCSYAIGLWYASILIKKKESNFGDLMKSFMVLIITALAIAETLALTPDIVKGSQALGSVFSILQRKTAINPNDPNSKMVTDVKGEIMFKNVSFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVIALVMRFYDPTSGSVLIDECDIKTLNLGSLRLGIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYRTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTISERLVQEALDNLMEGRTTILVAHRLSTVRDADSIAVLQNGRVAEMGSHEKLMAKAGSIYKQLVSLQQEKRDQEDH* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02597 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g02597 1250 PANTHER ABC TRANSPORTER B FAMILY 19 735 IPR039421 -
Rops9g02597 1250 SMART AAA_5 396 582 IPR003593 GO:0016887
Rops9g02597 1250 SMART AAA_5 1030 1216 IPR003593 GO:0016887
Rops9g02597 1250 Gene3D ABC transporter type 1, transmembrane domain 33 972 IPR036640 GO:0005524|GO:0016020
Rops9g02597 1250 FunFam ABC transporter B family member 4 360 613 - -
Rops9g02597 1250 FunFam ABC transporter B family member 4 993 1248 - -
Rops9g02597 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 605 IPR003439 GO:0005524
Rops9g02597 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Rops9g02597 1250 Pfam ABC transporter 389 536 IPR003439 GO:0005524
Rops9g02597 1250 CDD ABC_MTABC3_MDL1_MDL2 1003 1241 - -
Rops9g02597 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1241 IPR027417 -
Rops9g02597 1250 Gene3D - 993 1250 IPR027417 -
Rops9g02597 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Rops9g02597 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 606 IPR027417 -
Rops9g02597 1250 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524|GO:0016887
Rops9g02597 1250 SUPERFAMILY ABC transporter transmembrane region 669 982 IPR036640 GO:0005524|GO:0016020
Rops9g02597 1250 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Rops9g02597 1250 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Rops9g02597 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Rops9g02597 1250 Pfam ABC transporter transmembrane region 682 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g02597 1250 Pfam ABC transporter transmembrane region 47 319 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops9g02597 1250 SUPERFAMILY ABC transporter transmembrane region 34 343 IPR036640 GO:0005524|GO:0016020
Rops9g02597 1250 CDD ABC_MTABC3_MDL1_MDL2 371 606 - -
Rops9g02597 1250 Gene3D - 360 607 IPR027417 -
Rops9g02597 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02597 Rops-Chr9 48664476 48671315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02597 25 616 Calmodulin-binding Proteins AT2G36910 39.369 3.11e-112 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02597 K05658 - gmx:100787093 2126.67