Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02584 ATGGCGCAAATTCTGCTTCATGGGATTCTGCATGCCACCATCTGTGAGGTCGATAAGCTCAAAACTGGTGGTGGAGGCAACATTTTTAGTAAGATCAAGCAAAACTTTGAGGAAACTGTTGGTATTGGAAAAGGAGTTACCAAACTCTATGCTACCATTGGTCTGGAGAAGGCAAGAGTGGGAAGGACTAGGATTATAGAAAATGAACATGCTAATCCCAAATGGTGTGAGTCTTTTCACATTTATTGTGCTCCTATGGCTTCAAATATTATATTCGCTGTGAAGGATGCTTATCCTATTGGAGCAACTTTAATTGGAAGAACATATGTGCCTGTTGAGGAGGTCTTGGATGTTTTTGCTTTTGATAAGTTCAGACCTTATCTTATCCTTTCTAAGGTCATTTGTTATACTGACCATTCTGCAATTAAGTATTTACTTGCTAAGCAGGATGCTAAACCGAGACTGATTCGGTGGGTACTCTTGCTACAAGAGTTTGATCTTGAAATAAGGGATAAGAAAGGAACAGAAAACCTTGTAGCAGACCATTTATCCCGTCTGGATGAAGAAGGACTGGAATCCACTGAAGAGAGGGTCATAAACGAAACATTTTCAGATGAGCACCTCTTTGCAGTTACTTCTTTACCATGGTATGCTGATTTTGTTAATTTCCTTGCAGGTAAAATCATTCCACTGGACCTTACTTATCAACAAAAGAAGAAATTCTTTTCTGATGTTAAGAATTATTTGTGGGACGATCCTTATTTGTTTAGGATTTGTGCTGATAGTGTTATTAGAAGGTGTATTCATGGTAGTGAAGGTCATTCTATCTTAGAACATTGTCATGCTAGGGAAGTTGGTGGTCACTTTGGTCCAACTAGAACTGCACAAAAAGTTTTACAATGTGGGTTTTATTGGCCAAGTTTGTTTAAAGATGCTTTTGAATTTGTTAAAGCATGTGATAAATGCCAAAGAAGTGGCAACATTTCAAGGAAACATGATATGCCCTTGACAAACATCCTGATTTGTGATATTTTTGATGTTTGGGGCATTGATTTCATGGGACCCTTTCCCAAATCTTTTTCAAATGAATACATACTTGTTGCTGTGGATTATGTTTCAAAATGGGTTGAAGCAGTGGCATTACCAACTAATGATGCTCGGGTGGTTTGTAAATTTTTAAAACGAAATATTTTCACTCAATTTGGAACACCCCGAGCAATCATAAGTGATGGTGGCACTCATTTTTGCAACAAACAATTTGATAATCTCTTGATCAAATATGGTGTCACACATAAGGTAGCAACTCCTTATCATCCACAAACAAGTGGTCAGGTGGAAATTTCCAATCGGGAACTGAAAAGAATTCTGGAAAGGACTGTTAATATGTCTCACAAGGACTGGTCATTGAAATTAGATGACGCCTTATGGGCATATAGAACAGCATTTAAAACACCAATAGGCACATCCCCATATAGACTTGTGTTCGAAAAAGCTTGCCACTTACCAGTAGAGCTAGAACATAAAGCATATTGGGCACTTAAATTGTTAAATTTTGATGTTGCAGCTACAGGTGAACAAAGACGTAATCAGCTCAATGAACTAGATGAGCTTCGTCTTGATGCTTATGAAAATGCCAAACTCTAA 1644 0.3783 MAQILLHGILHATICEVDKLKTGGGGNIFSKIKQNFEETVGIGKGVTKLYATIGLEKARVGRTRIIENEHANPKWCESFHIYCAPMASNIIFAVKDAYPIGATLIGRTYVPVEEVLDVFAFDKFRPYLILSKVICYTDHSAIKYLLAKQDAKPRLIRWVLLLQEFDLEIRDKKGTENLVADHLSRLDEEGLESTEERVINETFSDEHLFAVTSLPWYADFVNFLAGKIIPLDLTYQQKKKFFSDVKNYLWDDPYLFRICADSVIRRCIHGSEGHSILEHCHAREVGGHFGPTRTAQKVLQCGFYWPSLFKDAFEFVKACDKCQRSGNISRKHDMPLTNILICDIFDVWGIDFMGPFPKSFSNEYILVAVDYVSKWVEAVALPTNDARVVCKFLKRNIFTQFGTPRAIISDGGTHFCNKQFDNLLIKYGVTHKVATPYHPQTSGQVEISNRELKRILERTVNMSHKDWSLKLDDALWAYRTAFKTPIGTSPYRLVFEKACHLPVELEHKAYWALKLLNFDVAATGEQRRNQLNELDELRLDAYENAKL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02584 547 PANTHER ENDONUCLEASE-RELATED 118 544 - -
Rops9g02584 547 Gene3D C2 domain 4 126 IPR035892 -
Rops9g02584 547 Pfam Integrase core domain 347 439 IPR001584 GO:0015074
Rops9g02584 547 CDD RNase_HI_RT_Ty3 118 186 - -
Rops9g02584 547 Pfam C2 domain 9 115 IPR000008 -
Rops9g02584 547 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 117 IPR035892 -
Rops9g02584 547 Gene3D - 232 325 - -
Rops9g02584 547 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Rops9g02584 547 SMART C2_3c 9 124 IPR000008 -
Rops9g02584 547 Pfam RNase H-like domain found in reverse transcriptase 118 165 IPR041373 -
Rops9g02584 547 ProSiteProfiles Integrase catalytic domain profile. 331 498 IPR001584 GO:0015074
Rops9g02584 547 Gene3D - 342 544 IPR036397 GO:0003676
Rops9g02584 547 Pfam Integrase zinc binding domain 274 325 IPR041588 -
Rops9g02584 547 SUPERFAMILY DNA/RNA polymerases 110 169 IPR043502 -
Rops9g02584 547 SUPERFAMILY Ribonuclease H-like 344 492 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02584 Rops-Chr9 48396132 48402210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02584 1 124 Phospholipase D Gene Family (Wang group) AT3G15730 64.800 1.46e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02584 - - qsu:111987139 633.639