Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02580 ATGGTTACCACTGCTAAATCTTCTTCTAATCATCACTCTCCGACGAGTGCTCCGTCATCGGCGCAATCCGGCGACGGCAATAACCCTATTTTGCCGCGAAAAAACCTTCCCTCGCCGTGGGCTCAGGTTGTTCGTGGCGGCGACACGGAATCAACCACCAGCATTCACCAATCACCGCTGTCGTCCTCATCTTCTTCATCGTCGCTCGCTAGTGGCGCTGCCGCCGTCGACCAAGTTCCGTCGTCTGATTCTTCCCCGAAGGCGGTTGTTCCTGCTTCGCCGCCGGTGGATAATACTAATACGATTGCCGTTGTAGATAGCTCCGATGCTAGTGATGGCAATGCGGGCCGTTCTAAGAAGCCTGCTTGGAACAAACCCTCCTCAAACGGCGTCGTTGGGGCAGGTCCTGTTATGGGTGCTGAATCATGGCCCGCTTTGTCTGCATCCACCAAAGCTTCTGGTAAATCCCCAGCTGAATCTTCCTCCAAGAATTCTGTTGATGGATCATCACTTTCCACTTCTCAGGGGCCTGTAACTTCACACTCTACTCAGAAACAAGGTACTAGTAATGCAAAACATAATTCTGCAACAAATTATAATATGTCTAATAGGCAAAGATCAATGAGGCCGGTAGGTGGCAGCAACATTGGGTCTGTTCATACTCAGAGTGGCTACTCTAACCCTCCCCCACCACCGCCGCCACCTCCCTTTCCCCTATATCAGCTCCCTCCAGTTAGCTTTGGTAATATGGTACCAGGGGTCCCTGACCCTTCTCCAAGAGATCATTTCCGGAACAATAACTGGGATACAAGACCATTAGTTGGGGGTTTTGTGCCTGCAATGAATGAACCACGGGGTTCCTCTCGCAGGGGTAATTTTGGACCCCATCCACGAGGAGATGGTTCCTATCATAATACTTATGGCAGCCGGCGTGATCAGGATCGTGGAAATTATGTTAATACTAGAGACACTCATGTACCCCAACCAAGGGTGCCTCCAAGAGGATTTTTGAGGCACCCACCACCTAGTACTGCTGCATTTGTGGGTCCTCAGCCCATTGGCCCCTTTGCTAACCCCATGGGTTTTCCTGAGTTCTATTACGTTCCAACAGTACCATTGGAACACTTTAGGGGCATGCCATTCTTCCCCCACAGCCCTTCTCCTGCGACGTTCTTCCCTGCTGCAGAATCTCCTCTGTCCAATATGATAGTCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTAAAAGATGAGTTTTTAAGGTCCAACATGGATGAACAGGGTTGGGTTCCAGTTACTTTGATAGCAAACTTCCCTCGAGTTAGAAGTTTGACAAGCAACATTCAGTTGATACTGGACTCATTGAGAACTTCCACCGTTGTGGAAGTGCAGGGTGACAAGTTGAGGAGGCATAATGAGTGGAAGAGATGGCTGCCCTCTGCTCAGCTTCGGGCTGATTCTGGTTCAATGTCTCCTGGTGGATCAAGATACAATAACCTGGCAGCTGATTTTCAAACTATCACCCTGGAAGAAACAACTAAAAAAGATGAAGCTCTCACAGAGTCTTCCAGTCAGTCTCAACTCCCAAACGGTGGTGATGCTGCAGGGAACAACAGTTAA 1626 0.4895 MVTTAKSSSNHHSPTSAPSSAQSGDGNNPILPRKNLPSPWAQVVRGGDTESTTSIHQSPLSSSSSSSSLASGAAAVDQVPSSDSSPKAVVPASPPVDNTNTIAVVDSSDASDGNAGRSKKPAWNKPSSNGVVGAGPVMGAESWPALSASTKASGKSPAESSSKNSVDGSSLSTSQGPVTSHSTQKQGTSNAKHNSATNYNMSNRQRSMRPVGGSNIGSVHTQSGYSNPPPPPPPPPFPLYQLPPVSFGNMVPGVPDPSPRDHFRNNNWDTRPLVGGFVPAMNEPRGSSRRGNFGPHPRGDGSYHNTYGSRRDQDRGNYVNTRDTHVPQPRVPPRGFLRHPPPSTAAFVGPQPIGPFANPMGFPEFYYVPTVPLEHFRGMPFFPHSPSPATFFPAAESPLSNMIVNQIDYYFSDANLVKDEFLRSNMDEQGWVPVTLIANFPRVRSLTSNIQLILDSLRTSTVVEVQGDKLRRHNEWKRWLPSAQLRADSGSMSPGGSRYNNLAADFQTITLEETTKKDEALTESSSQSQLPNGGDAAGNNS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02580 541 PANTHER LUPUS LA PROTEIN-RELATED 140 492 IPR045180 -
Rops9g02580 541 MobiDBLite consensus disorder prediction 146 224 - -
Rops9g02580 541 MobiDBLite consensus disorder prediction 1 241 - -
Rops9g02580 541 MobiDBLite consensus disorder prediction 1 29 - -
Rops9g02580 541 ProSiteProfiles La-type HTH domain profile. 393 482 IPR006630 -
Rops9g02580 541 MobiDBLite consensus disorder prediction 521 541 - -
Rops9g02580 541 MobiDBLite consensus disorder prediction 225 241 - -
Rops9g02580 541 MobiDBLite consensus disorder prediction 515 541 - -
Rops9g02580 541 CDD LAM 401 472 - -
Rops9g02580 541 Gene3D - 393 481 IPR036388 -
Rops9g02580 541 MobiDBLite consensus disorder prediction 270 334 - -
Rops9g02580 541 MobiDBLite consensus disorder prediction 305 319 - -
Rops9g02580 541 MobiDBLite consensus disorder prediction 45 114 - -
Rops9g02580 541 SUPERFAMILY "Winged helix" DNA-binding domain 392 481 IPR036390 -
Rops9g02580 541 SMART la 397 473 IPR006630 -
Rops9g02580 541 Pfam La domain 403 458 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02580 Rops-Chr9 48299064 48304417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02580 K18757 - gmx:100785504 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02580 9 48299064 48304417 Rops9g02580 9 48299064 48304417 ECH
Rops9g02580 9 48299064 48304417 Rops10g02490 10 43488817 43492323 PCT