Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02578 ATGGCTCAGACCACACCAAATCACACACAGACCGTTTCTGGGTGGGCAGCTCATGATTCTTCCGGCAAGCTTACCCCATACAGCTTCAAAAGAAGGGAGAACGGTGTTAACGATGTGACTATAAAGATCTTGTATTGTGGGATTTGCCACACTGACATTCACTATGCTAAAAATGAGTGGGGCATCACTATGTATCCTGTTGTACCCGGGCACGAGATGATTGGGGTGATTACAAAGGTGGGGAGCGAAGTGAAAGGGTTCAAGGAAGGAGACAAAGTGGGGGTGGGGTGTTTGGCAGCTACATGTTTGGATTGTGAGTACTGCAAAAACGATCAGGAGAATTACTGTGGACAGTTGCAGTTTACATACAATGGAGTTTTCTGGGATGGCAGCATCACCTATGGTGGCTACTCTGATATGTTTGTCTCAGATTACAGATATGTGGTACACATTCCGGAAACCCTGCCACTGGATGCAGCAGCTCCTCTACTATGTGCTGGAATAACAGTGTTCAGTCCCTTGAAAGACCACGATTTGGTAGCATCACCAGGGAAAAAGATTGGGGTGGTTGGTTTGGGAGGTCTTGGACACATAGCTGTGAAATTTGGCAAGGCAATGGGTCACCATGTTACTGTCATCAGCACTTCTCCATCCAAAGAAGCAGAGGCTAAGCAACGTTTGGGAGCTGATGATTTCATAGTCAGCACCAACCAAAACCAATTGCAGGCTGCAAAGAGAAGCCTAGATTTCATTTTGGACACTGTATCAGCAGAGCACTCTCTCTTATCCATCTTGGAATTGCTCAAAATAAATGGGACTTTATTTATAGTGGGAGCACCGGACAAGCCATTCCAATTGCCTGCTTTCCCATTGATATTTGGGAAGAGATCAGTGAAAGGTGGCATCATAGGAGGAATAAAAGAGACGCAAGAAATGTTGGATTATTGTGGGAAACATAATATCACGTGTGACATTGAGTCAGTCAAACCAGACAAAATCAACGAGGCTATGGAGCGTCTTGCTAAGAATGATGTCCGTTACCGTTTCGTTATTGACATTGCTGGCAGCTCAAATAACTAG 1080 0.4509 MAQTTPNHTQTVSGWAAHDSSGKLTPYSFKRRENGVNDVTIKILYCGICHTDIHYAKNEWGITMYPVVPGHEMIGVITKVGSEVKGFKEGDKVGVGCLAATCLDCEYCKNDQENYCGQLQFTYNGVFWDGSITYGGYSDMFVSDYRYVVHIPETLPLDAAAPLLCAGITVFSPLKDHDLVASPGKKIGVVGLGGLGHIAVKFGKAMGHHVTVISTSPSKEAEAKQRLGADDFIVSTNQNQLQAAKRSLDFILDTVSAEHSLLSILELLKINGTLFIVGAPDKPFQLPAFPLIFGKRSVKGGIIGGIKETQEMLDYCGKHNITCDIESVKPDKINEAMERLAKNDVRYRFVIDIAGSSNN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02578 359 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Rops9g02578 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Rops9g02578 359 FunFam probable cinnamyl alcohol dehydrogenase 15 173 - -
Rops9g02578 359 PANTHER ALDEHYDE REDUCTASE 7 355 IPR047109 GO:0016616
Rops9g02578 359 CDD CAD1 14 352 IPR047109 GO:0016616
Rops9g02578 359 Gene3D - 166 323 - -
Rops9g02578 359 Pfam Alcohol dehydrogenase GroES-like domain 37 150 IPR013154 -
Rops9g02578 359 SUPERFAMILY GroES-like 17 177 IPR011032 -
Rops9g02578 359 Pfam Zinc-binding dehydrogenase 194 314 IPR013149 -
Rops9g02578 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Rops9g02578 359 Gene3D - 15 353 - -
Rops9g02578 359 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02578 Rops-Chr9 48237032 48239530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02578 14 356 Monolignol Biosynthesis Gene Families AT2G21730 58.140 1.76e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02578 K00083 - gmx:100820588 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02578 9 48237032 48239530 Rops9g02578 9 48237032 48239530 ECH