Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02568 ATGGGGCACTGCTTCAGCAAACCCCCCGACCCCGACCATGACAGCAGAGTAGTTATCACTTATGATTATGGTTCACAACCCCATCACTACCAGCAACTTCCTCAGAGACCACCTCAACCTCCTTACCCATACCGTGCTGCAAACTCAGACCCTTCTCCATCTTTCCCTTCATCATCCTTTGCTGATCAACCAATATTAGGCAAACCATACATTGACATGAACACACTTTACACTTTTGGGAAGGTACTCGGAAGGGGTCAATTTGGAATCACTTATCTTTGCACCGAGAATACCACAGGACGAAAATATGCTTGTAAGTCCATTCCAAGGCGAAAACTAACTAGAAGGAAGCAAATTGAGGATGTTAAGAGAGAAATTATGATCTTACAGCACCTAACGGGACAACCCAATATAGTTGAGATCAAGGGTGCTTATGAGGATAGGCAGAGTGTGCATTTGGTGATGGAGTTGTGTTTGGGTGGTGAGCTTTTTGATCGTATCACTGCAAAGGGTAGTTACTCTGAGCGTGAAGCTGCGTCTATATTCAAGCAAATTGTGAATGTAGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGACCTTAAGCCTGAGAATTTCTTGCTAGTTAGTAAGGATCCTAAGGCACCTTTGAAAGCCACTGATTTTGGATTGTCTGTCTTCATTGAAGAAGGTAAAGTGTATAAAGAAATTGTTGGGAGTGCATACTATGTGGCTCCAGAGGTGTTAAGAAAGAGTTATGGAAAGGAGATAGATGTATGGAGCGCAGGAATCATTTTATACATCCTCTTATGTGGTGTGCCTCCATTTTGGGCTGAAACCGAAAAAGGCATATTTGAAGCTATATTGGGAGGTAAGCTGGATCTGGAGAGTGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAACTGTTGAATTATGACCCTAAGAAACGCATTACAGCTGCTGAAGCTCTTGAACATCCATGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTATAGACAATGCTGTTTTATTTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGGTTGAAACAAATGTTCAATAATATGGATACTGATCGCAGTGGCACAATCACATACGAAGAACTAAAATCTGGGTTGACCAAATTGGGATCAAAGCTTAGTGAATCTGAAATAAAGCAGCTATTGGACGCTGCTGATGTTGACAAAAGTGGGACTATTGATTATCATGAATTCATTACTGCCACTATAAACCGGCACAAACTTGAAAAGGAAGAAAATATGTTCAAGGCTTTTCAATACTTTGACAAGGATAATAGCGGTTATATAACAAGAGATGAGCTTAGACAAGCTTTGACTGAATATCAGATGGGAGATGAGGCGACTATAGATGAAGTCATCGCTGATGTTGACACTGACAACGATGGGAAAATTAATTACCAGGAGTTTGTAGCAATGATGAGGAAGGGGACATTGGATCATGATGAGAAAGAGAAACCCCGATAA 1587 0.414 MGHCFSKPPDPDHDSRVVITYDYGSQPHHYQQLPQRPPQPPYPYRAANSDPSPSFPSSSFADQPILGKPYIDMNTLYTFGKVLGRGQFGITYLCTENTTGRKYACKSIPRRKLTRRKQIEDVKREIMILQHLTGQPNIVEIKGAYEDRQSVHLVMELCLGGELFDRITAKGSYSEREAASIFKQIVNVVHACHFMGVMHRDLKPENFLLVSKDPKAPLKATDFGLSVFIEEGKVYKEIVGSAYYVAPEVLRKSYGKEIDVWSAGIILYILLCGVPPFWAETEKGIFEAILGGKLDLESAPWPSISAAAKDLIRKLLNYDPKKRITAAEALEHPWMKEGGEASDKPIDNAVLFRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSESEIKQLLDAADVDKSGTIDYHEFITATINRHKLEKEENMFKAFQYFDKDNSGYITRDELRQALTEYQMGDEATIDEVIADVDTDNDGKINYQEFVAMMRKGTLDHDEKEKPR* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02568 528 MobiDBLite consensus disorder prediction 33 47 - -
Rops9g02568 528 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Rops9g02568 528 Pfam EF-hand domain pair 453 515 IPR002048 GO:0005509
Rops9g02568 528 FunFam Calcium-dependent protein kinase 1 343 518 - -
Rops9g02568 528 SUPERFAMILY Protein kinase-like (PK-like) 77 345 IPR011009 -
Rops9g02568 528 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Rops9g02568 528 MobiDBLite consensus disorder prediction 26 59 - -
Rops9g02568 528 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Rops9g02568 528 FunFam Calcium-dependent protein kinase 1 79 162 - -
Rops9g02568 528 ProSiteProfiles Protein kinase domain profile. 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02568 528 Pfam Protein kinase domain 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02568 528 Gene3D Transferase(Phosphotransferase) domain 1 163 342 - -
Rops9g02568 528 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Rops9g02568 528 SMART efh_1 418 446 IPR002048 GO:0005509
Rops9g02568 528 SMART efh_1 454 482 IPR002048 GO:0005509
Rops9g02568 528 SMART efh_1 382 410 IPR002048 GO:0005509
Rops9g02568 528 SMART efh_1 489 517 IPR002048 GO:0005509
Rops9g02568 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Rops9g02568 528 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Rops9g02568 528 SUPERFAMILY EF-hand 374 515 IPR011992 -
Rops9g02568 528 CDD STKc_CAMK 77 334 - -
Rops9g02568 528 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Rops9g02568 528 SMART serkin_6 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02568 528 Gene3D Phosphorylase Kinase; domain 1 79 162 - -
Rops9g02568 528 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Rops9g02568 528 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Rops9g02568 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 510 - -
Rops9g02568 528 Gene3D - 343 523 - -
Rops9g02568 528 FunFam calcium-dependent protein kinase 1 163 342 - -
Rops9g02568 528 ProSiteProfiles EF-hand calcium-binding domain profile. 486 520 IPR002048 GO:0005509
Rops9g02568 528 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02568 Rops-Chr9 48089302 48093373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02568 1 528 EF-hand Containing Proteins AT3G20410 65.009 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops9g02568 Pkinase 3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02568 K13412 - gmx:100816157 789.26